Job Description P27253 Confidence 27.48% Date Thu Jan 5 11:43:33 GMT 2012 Rank 460 Aligned Residues 138 % Identity 14% Template c3d02A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.		.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.					.	620	.	.	.	.	.	.	.	.	.	630	.	.				.	.	.	.
Predicted Secondary structure																																.		.																							.	.	.	.															.	.	.
Query SS confidence																																.		.																							.	.	.	.															.	.	.
Query Sequence		E	F	D	A	I	V	A	Q	T	E	Q	F	L	A	D	N	G	R	R	P	R	I	L	I	A	K	M	G	Q	D	.	G	.	H	D	R	G	A	K	V	I	A	S	A	Y	S	D	L	G	F	D	V	D	L	S	.	.	.	.	P	M	F	S	T	P	E	E	I	A	R	L	A	V	.	.	.	E	N	D	V
Query Conservation																																.		.																							.	.	.	.															.	.	.
Alig confidence																																.		.																							.	.	.	.															.	.	.
Template Conservation
Template Sequence		N	E	K	F	A	A	E	Y	V	E	H	X	A	K	R	X	G	G	K	G	G	Y	V	I	Y	V	G	S	L	T	V	P	Q	H	N	L	W	A	D	L	L	V	K	Y	Q	K	E	H	Y	P	D	X	H	E	V	T	R	R	X	P	V	A	E	S	V	D	D	S	R	R	T	T	L	D	L	X	K	T	Y	P
Template Known Secondary structure																	T	T	T									S		S	S																				T	T				S	S	S		B	S		T	T																	T
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		637	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.						.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure				.																																																								.	.	.	.	.
Query SS confidence				.																																																								.	.	.	.	.
Query Sequence		H	V	.	V	G	A	S	S	L	A	A	G	H	K	T	L	I	P	E	L	V	E	A	L	K	K	W	G	R	E	D	I	C	V	V	A	G	G	V	I	P	P	Q	D	Y	A	F	L	Q	E	R	G	V	A	A	I	Y	G	.	.	.	.	.	P	G	T	P	M	L	D	S	V	R	D	V	L	N
Query Conservation				.																																																								.	.	.	.	.
Alig confidence				.									.	.	.	.																																												.	.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		D	L	K	A	V	V	S	F	G	S	N	.	.	.	.	G	P	I	G	A	G	R	A	V	K	E	K	R	A	K	N	K	V	A	V	Y	G	X	X	I	P	S	Q	A	A	S	L	I	K	S	G	D	I	T	E	G	I	T	Y	D	P	A	T	A	G	Y	A	L	A	A	V	A	S	T	L	L	N
Template Known Secondary structure		T							S	S	T	T	.	.	.	.												T	T		T	T	T																			T	S	S																								T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions