 |
Job Description | P27253 | Confidence | 52.24% | Date | Thu Jan 5 11:43:33 GMT 2012 |
Rank | 274 | Aligned Residues | 67 |
% Identity | 21% | Template | c1wziA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:malate dehydrogenase; |
PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus
|
Resolution | 2.00 Å |
|
 |
  |   |
634 | . | . | . | . | . | 640 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | |
. | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | |
|
. | . | . | . | . | . | |
|
690 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  | . | . |  |  |
|
|
|
| . | . |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
Query Sequence |   |
N | D | V | H | V | V | G | A | S | S | L | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | G | H | K | T | L | I | P | E | L | V | E | A | L | K | K | W | G | . |
R | E | D | I | C | V | V | A | G | G | V | I | P | P | Q | D | Y | A | F | L | . |
. |
Q | E | R | G | V | A | . |
. |
A | I | Y | G | P | G | T |
Query Conservation |   |
|
|
|   |
|   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|   |   |   |   |
|   |   |
|
|
|   |
|
| . |   |   |   |   |   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |
| . | . |   |   |
|
|
|   | . | . |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|
| . | . |
|
|
|   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|
|
|   |
|
|
Template Sequence |   |
K | D | A | D | Y | A | L | L | V | G | A | A | P | R | K | A | G | M | E | R | R | D | L | L | Q | V | N | G | K | I | F | T | E | Q | G | R | A | L | A | E | V | A | K | K | D | V | K | V | L | V | V | G | N | . |
. |
P | A | N | T | N | A | L | I | A | Y | K | N | A | P | G | L | N | P | R | N | F | T | A | M | T |
Template Known Secondary structure |   |
T | T |
| S |  |  |  |  |
|
|
|
|
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|  |  |  |  |
| S | S | . | . | S |  |  |  |  |  |  |  |  |  |  | T |
| T | T | S |
| G | G | G |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
. | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
  |
  |   |
697 | . | . | 700 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
P | M | L | D | S | V | R |
Query Conservation |   |
  |   |   |   |   |   |   |
Alig confidence |   |
| . |
|
|
|
|
|
Template Conservation |   |
  | . |
|
|
|   |
|
Template Sequence |   |
R | . |
L | D | H | N | R |
Template Known Secondary structure |   |
 | . |  |  |  |  |  |
Template Predicted Secondary structure |   |
 | . |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
156 | |
. | . | . | 160 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|