Job Description P0A9C5 Confidence 100.00% Date Thu Jan 5 11:09:53 GMT 2012 Rank 10 Aligned Residues 352 % Identity 23% Template c3o6xC_ PDB info PDB header:ligase Chain: C: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																											.																											.	.	.
Query SS confidence																											.																											.	.	.
Query Sequence		P	D	A	S	T	A	V	I	D	P	F	F	A	D	S	T	L	I	I	R	C	D	I	L	E	.	P	G	T	L	Q	G	Y	D	R	D	P	R	S	I	A	K	R	A	E	D	Y	L	R	S	T	G	.	.	.	I	A	D	T	V	L	F	G	P	E	P	E	F	F	L	F	D	D	I	R	F	G	S	S	I
Query Conservation																											.																											.	.	.
Alig confidence												.	.	.													.																											.	.	.
Template Conservation												.	.	.
Template Sequence		W	D	G	S	S	P	A	F	V	V	.	.	.	D	T	T	L	C	I	P	T	I	F	I	E	A	L	D	Y	K	T	P	L	L	K	A	L	A	A	V	D	K	A	A	T	E	V	C	Q	L	F	D	K	N	I	T	R	V	F	T	N	L	G	W	E	Q	E	Y	F	L	V	D	T	S	L	Y	N	A	R	P
Template Known Secondary structure		B		T	T	S						.	.	.	S	S						B							B	S																					T	S	S	S					B																				T		T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	S	H	V	A	I	D	D	I	E	G	A	W	N	S	S	T	Q	Y	E	G	G	N	K	G	H	R	P	A	V	K	G	G	Y	F	P	V	P	P	V	D	S	A	Q	D	I	R	S	E	M	C	L	V	M	E	Q	M	G	L	V	V	E	A	H	H	H	E	V	A	T	A	G	Q	N	E	V	A	T	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		D	L	R	L	T	G	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	G	H	S	I	P	P	R	V	T	A	F	M	K	E	L	E	I	E	C	H	K	L	G	I	P	V	K	T	R	H	N	E	V	A	.	P	N	Q	F	E	L	A	P	I
Template Known Secondary structure		T					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																							T	T								B		S	S	.	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
		231	.	.	.	.	.	.	.																											.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																							.													.	.	.	.
Query SS confidence																																																							.													.	.	.	.
Query Sequence		F	N	T	M	T	K	K	A	D	E	I	Q	I	Y	K	Y	V	V	H	N	V	A	H	R	F	G	K	T	A	T	F	M	P	K	P	M	F	G	D	N	G	S	G	M	H	C	H	M	S	L	S	K	N	.	G	V	N	L	F	A	G	D	K	Y	A	G	.	.	.	.	L	S	E	Q	A	L	Y	Y	I	G
Query Conservation																																																							.													.	.	.	.
Alig confidence																																																							.													.	.	.	.
Template Conservation
Template Sequence		F	E	N	C	N	L	A	N	D	H	N	Q	L	V	M	D	L	M	K	R	I	A	R	K	H	H	F	A	V	L	F	H	E	K	P	Y	N	G	V	N	G	S	G	K	H	N	N	W	S	L	C	T	D	T	G	I	N	L	F	A	P	G	K	N	P	K	G	N	M	L	F	L	T	F	L	V	N	V	L	M
Template Known Secondary structure																										T	T						S	S		S	S	T	T	S				B									B	T	T				S	S				S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330						.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.
Predicted Secondary structure																																.	.	.	.	.																		.																					.	.	.
Query SS confidence																																.	.	.	.	.																		.																					.	.	.
Query Sequence		G	V	I	K	H	A	K	A	I	N	A	L	A	N	P	T	T	N	S	Y	K	R	L	V	P	G	Y	E	A	P	.	.	.	.	.	V	M	L	A	Y	S	A	R	N	R	S	A	S	I	R	I	P	.	V	V	S	S	P	K	A	R	R	I	E	V	R	F	P	D	P	A	A	N	.	.	.	P	Y	L	C
Query Conservation																																.	.	.	.	.																		.																					.	.	.
Alig confidence																						.			.							.	.	.	.	.																		.																					.	.	.
Template Conservation																						.			.
Template Sequence		M	V	H	K	N	Q	D	L	L	R	A	S	I	M	S	A	G	N	S	H	.	R	L	.	G	A	N	E	A	P	P	A	I	L	S	I	F	L	G	S	Q	L	S	A	T	L	D	E	I	R	N	R	T	S	P	F	A	F	T	G	N	R	F	E	F	R	A	A	G	S	S	A	N	C	A	A	A	M	I	A
Template Known Secondary structure						T								T							T	.	T	S	.	S	B	T	T	B			S																T					S	S	S	S		B		S	S	S				T	T	S	B	S	S	S
Template Predicted Secondary structure																						.			.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.																	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																				.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																				.	.
Query Sequence		F	A	A	L	L	M	A	G	L	D	G	I	K	N	K	I	H	P	G	E	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	N	L	Y	D	L	P	P	E	E	A	K	E	.	.	.	I	P	Q	V	A	G	S	L	E	E	A	L	N	E	L	D	L	D	R	.	.	E	F	L	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																				.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.									.											.	.
Template Conservation																																																																	.
Template Sequence		I	N	A	A	M	A	N	Q	L	N	E	F	K	A	S	V	D	K	D	E	A	I	F	R	I	L	K	E	N	I	I	A	S	E	L	I	R	F	E	G	D	G	Y	S	E	E	W	K	Q	E	A	A	R	R	G	L	T	N	I	C	H	V	P	.	E	A	L	M	H	Y	M	D	N	Q	S	R	A	V	L	I
Template Known Secondary structure																	T																		G	G	G				S		T	T	S									T	T	T									.					T	T	T	S								T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	V	F	T	D	E	A	I	D	A	Y	I	A	L	R	R	E	E	D	D	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	R	I	F	N	E	T	E	L	A	C	R	L	E	V	E	L	E	K	Y	T	M	K
Template Known Secondary structure		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.