Job Description P0A9C5 Confidence 100.00% Date Thu Jan 5 11:09:53 GMT 2012 Rank 2 Aligned Residues 460 % Identity 56% Template c3ng0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803 Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	E	H	V	L	T	M	L	N	E	H	E	V	K	F	V	D	L	R	F	T	D	T	K	G	K	E	Q	H	V	T	I	P	A	H	Q	V	N	A	E	F	F	E	E	G	K	M	F	D	G	S	S	I	G	G	W	K	G	I	N	E	S	D	M	V	L	M	P	D	A	S	T	A	V	I	D	P	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	Q	E	V	L	K	W	I	Q	D	E	N	I	K	I	I	D	L	K	F	I	D	T	P	G	I	W	Q	H	C	S	F	Y	Y	D	Q	L	D	E	N	S	F	T	E	G	I	P	F	D	G	S	S	I	R	G	W	K	A	I	N	E	S	D	M	C	M	V	P	D	P	N	T	A	T	I	D	P	F	C
Template Known Secondary structure													T	T											S	S	S									G	G	G			G	G	G	G	T	T						T	T	S	S	T	T	S			G	G	G									G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	S	T	L	I	I	R	C	D	I	L	E	P	G	T	L	Q	G	Y	D	R	D	P	R	S	I	A	K	R	A	E	D	Y	L	R	S	T	G	I	A	D	T	V	L	F	G	P	E	P	E	F	F	L	F	D	D	I	R	F	G	S	S	I	S	G	S	H	V	A	I	D	D	I	E	G	A	W	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	P	T	L	S	M	I	C	S	I	K	E	P	R	T	G	E	W	Y	N	R	D	P	R	T	I	A	A	K	A	A	E	Y	L	R	G	T	G	I	A	D	T	V	Y	F	G	P	E	A	E	F	F	L	F	D	D	I	R	F	G	Q	T	E	N	S	S	Y	Y	F	A	D	S	V	E	G	R	W	N	T
Template Known Secondary structure		S	S												T	T	T	S	S	B		T	T																	T	S		S														S								S	S									T	T		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		S	T	Q	Y	E	G	G	N	K	G	H	R	P	A	V	K	G	G	Y	F	P	V	P	P	V	D	S	A	Q	D	I	R	S	E	M	C	L	V	M	E	Q	M	G	L	V	V	E	A	H	H	H	E	V	A	T	A	.	G	Q	N	E	V	A	T	R	F	N	T	M	T	K	K	A	D	E	I	Q	I	Y	K
Query Conservation																																																										.
Alig confidence																																																								.		.
Template Conservation																																																								.
Template Sequence		G	R	E	E	E	G	G	N	L	G	Y	K	P	G	Y	K	Q	G	Y	F	P	V	A	P	T	D	T	A	Q	D	I	R	T	E	M	L	L	T	M	A	A	F	G	V	P	I	E	K	H	H	H	E	V	A	.	S	G	G	Q	N	E	L	G	I	K	F	D	K	L	V	N	S	A	D	N	L	M	I	Y	K
Template Known Secondary structure		T				T	T									T	T			S	S			T	T	T																	T	T										S	S	.	T	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	V	H	N	V	A	H	R	F	G	K	T	A	T	F	M	P	K	P	M	F	G	D	N	G	S	G	M	H	C	H	M	S	L	S	K	N	G	V	N	L	F	A	G	D	K	Y	A	G	L	S	E	Q	A	L	Y	Y	I	G	G	V	I	K	H	A	K	A	I	N	A	L	A	N	P	T	T	N	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	I	K	N	V	A	K	K	Y	G	K	T	V	T	F	M	P	K	P	I	F	N	D	N	G	S	G	M	H	V	H	Q	S	L	W	K	D	G	Q	P	L	F	A	G	D	K	Y	A	G	F	S	Q	M	G	L	W	Y	I	G	G	I	L	K	H	A	P	A	L	L	A	F	T	N	P	T	T	N	S	Y
Template Known Secondary structure											T	T							S		S	S	T	T	S														T	T			T	T	B	S	S	S	G	G	G	B																							S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		K	R	L	V	P	G	Y	E	A	P	V	M	L	A	Y	S	A	R	N	R	S	A	S	I	R	I	P	V	V	S	.	S	P	K	A	R	R	I	E	V	R	F	P	D	P	A	A	N	P	Y	L	C	F	A	A	L	L	M	A	G	L	D	G	I	K	N	K	I	H	P	G	E	A	M	D	K	N	L	Y	D
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		K	R	L	V	P	G	F	E	A	P	V	N	L	A	Y	S	Q	G	N	R	S	A	S	V	R	I	P	L	S	G	G	N	P	K	A	K	R	L	E	F	R	C	P	D	A	T	S	N	P	Y	L	A	F	A	A	M	L	C	A	G	I	D	G	I	K	N	Q	I	D	P	G	E	P	L	D	V	D	I	E	L
Template Known Secondary structure				B	B	T	T	T	B				B						S		T	T	S	S							S	S		G	G	G							S			T	T	S																																	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		L	P	P	E	E	A	K	E	I	P	Q	V	A	G	S	L	E	E	A	L	N	E	L	D	L	D	R	E	F	L	K	A	G	G	V	F	T	D	E	A	I	D	A	Y	I	A	L	R	R	E	.	E	D	D	R	V	R	M	T	P	H	P	V	E	F	E	L	Y	Y	S
Query Conservation																																																				.
Alig confidence		.	.	.	.	.	.																																													.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	K	I	P	S	T	P	G	S	L	E	A	A	L	E	A	L	E	K	D	H	E	F	L	T	G	T	G	V	F	S	P	D	F	V	E	S	W	I	E	Y	K	L	D	N	E	V	N	P	M	R	L	R	P	H	P	Y	E	F	S	L	Y	Y	D
Template Known Secondary structure		.	.	.	.	.	.	T	S	S		B			S	S											S						T	T	T	S	S																T							S			T							S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.