Job Description P0A9C5 Confidence 100.00% Date Thu Jan 5 11:09:53 GMT 2012 Rank 3 Aligned Residues 467 % Identity 52% Template c1htoB_ PDB info PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	E	H	V	L	T	M	L	N	E	H	E	V	K	F	V	D	L	R	F	T	D	T	K	G	K	E	Q	H	V	T	I	P	A	H	Q	V	N	A	E	F	F	E	E	G	K	M	F	D	G	S	S	I	G	G	W	K	G	I	N	E	S	D	M	V	L	M	P	D	A	S	T	A	V	I	D	P	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	D	D	V	F	K	L	A	K	D	E	K	V	E	Y	V	D	V	R	F	C	D	L	P	G	I	M	Q	H	F	T	I	P	A	S	A	F	D	K	S	V	F	D	D	G	L	A	F	D	G	S	S	I	R	G	F	Q	S	I	H	E	S	D	M	L	L	L	P	D	P	E	T	A	R	I	D	P	F	R
Template Known Secondary structure													T	T											S	S	S									G	G	G		S						T								S	S	S	S	S			T	T	T																S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	S	T	L	I	I	R	C	D	I	L	E	P	G	T	L	Q	G	Y	D	R	D	P	R	S	I	A	K	R	A	E	D	Y	L	R	S	T	G	I	A	D	T	V	L	F	G	P	E	P	E	F	F	L	F	D	D	I	R	F	G	S	S	I	S	G	S	H	V	A	I	D	D	I	E	G	A	W	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	K	T	L	N	I	N	F	F	V	H	D	P	F	T	L	E	P	Y	S	R	D	P	R	N	I	A	R	K	A	E	N	Y	L	I	S	T	G	I	A	D	T	A	Y	F	G	A	E	A	E	F	Y	I	F	D	S	V	S	F	D	S	R	A	N	G	S	F	Y	E	V	D	A	I	S	G	W	W	N	T
Template Known Secondary structure		S	S												T	T	T			B		T	T																	S	S		S														S								S	S									T	T		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																																				.
Query SS confidence							.	.	.																																																				.
Query Sequence		S	T	Q	Y	E	.	.	.	G	G	N	K	G	H	R	P	A	V	K	G	G	Y	F	P	V	P	P	V	D	S	A	Q	D	I	R	S	E	M	C	L	V	M	E	Q	M	G	L	V	V	E	A	H	H	H	E	V	A	T	A	.	G	Q	N	E	V	A	T	R	F	N	T	M	T	K	K	A	D	E	I	Q
Query Conservation							.	.	.																																																				.
Alig confidence							.	.	.																																																		.		.
Template Conservation																																																											.
Template Sequence		G	A	A	T	E	A	D	G	S	P	N	R	G	Y	K	V	R	H	K	G	G	Y	F	P	V	A	P	N	D	Q	Y	V	D	L	R	D	K	M	L	T	N	L	I	N	S	G	F	I	L	E	K	G	H	H	E	V	G	.	S	G	G	Q	A	E	I	N	Y	Q	F	N	S	L	L	H	A	A	D	D	M	Q
Template Known Secondary structure		T		S	B		T	T	S		B									S	S		S	S			T	T	T																	T	T					T	T						.		T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		I	Y	K	Y	V	V	H	N	V	A	H	R	F	G	K	T	A	T	F	M	P	K	P	M	F	G	D	N	G	S	G	M	H	C	H	M	S	L	S	K	N	G	V	N	L	F	A	G	D	.	K	Y	A	G	L	S	E	Q	A	L	Y	Y	I	G	G	V	I	K	H	A	K	A	I	N	A	L	A	N	P	T
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		L	Y	K	Y	I	I	K	N	T	A	W	Q	N	G	K	T	V	T	F	M	P	K	P	L	F	G	D	N	G	S	G	M	H	C	H	Q	S	L	W	K	D	G	A	P	L	M	Y	D	E	T	G	Y	A	G	L	S	D	T	A	R	H	Y	I	G	G	L	L	H	H	A	P	S	L	L	A	F	T	N	P	T
Template Known Secondary structure														T	T							S		S	S	T	T	S														T	T			S	S	B		T	T	S	G	G	G	B																							S		S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	N	S	Y	K	R	L	V	P	G	Y	E	A	P	V	M	L	A	Y	S	A	R	N	R	S	A	S	I	R	I	P	V	V	S	.	S	P	K	A	R	R	I	E	V	R	F	P	D	P	A	A	N	P	Y	L	C	F	A	A	L	L	M	A	G	L	D	G	I	K	N	K	I	H	P	G	E	A	M	D	K
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		V	N	S	Y	K	R	L	V	P	G	Y	E	A	P	I	N	L	V	Y	S	Q	R	N	R	S	A	C	V	R	I	P	I	T	G	S	N	P	K	A	K	R	L	E	F	R	S	P	D	S	S	G	N	P	Y	L	A	F	S	A	M	L	M	A	G	L	D	G	I	K	N	K	I	E	P	Q	A	P	V	D	K
Template Known Secondary structure		T	T					S	S	S	S	S			S							S	S		T	T									T	T		G	G	G							S			S	S	S																			T	T									S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		N	L	Y	D	L	P	P	E	E	A	K	E	I	P	Q	V	A	G	S	L	E	E	A	L	N	E	L	D	L	D	R	E	F	L	K	A	G	G	V	F	T	D	E	A	I	D	A	Y	I	A	L	R	R	.	E	E	D	D	R	V	R	M	T	P	H	P	V	E	F	E	L	Y	Y	S	V
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		D	L	Y	E	L	P	P	E	E	A	A	S	I	P	Q	T	P	T	Q	L	S	D	V	I	D	R	L	E	A	D	H	E	Y	L	T	E	G	G	V	F	T	N	D	L	I	E	T	W	I	S	F	K	R	E	N	E	I	E	P	V	N	I	R	P	H	P	Y	E	F	A	L	Y	Y	D	V
Template Known Secondary structure			S	S	S			T	T	T	G	G	G	S		B			S	S																	G	G	G	S	S																T							S			T							T	T
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.