 |
Job Description | P05194 | Confidence | 96.63% | Date | Thu Jan 5 10:58:42 GMT 2012 |
Rank | 43 | Aligned Residues | 116 |
% Identity | 16% | Template | c3qc3B_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; |
PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
|
Resolution | 2.20 Å |
|
 |
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  | . | . | . |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | I | V | S | L | M | A | K | D | I | A | S | V | K | S | E | A | L | A | Y | R | E | A | D | F | D | I | L | E | W | R | V | D | H | Y | A | D | L | S | N | V | E | S | V | M | A | A | A | K | I | L | R | E | T | M | P | E | K | P | L | L | . |
. |
. |
F | T | F | R | S | A | K | E | G | G | E | Q | A | I | S |
Query Conservation |   |
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
| . | . | . |   |
|   |
|   |   |   |
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |
Template Sequence |   |
K | I | G | P | S | I | L | N | S | D | L | A | N | L | G | A | E | C | L | R | X | L | D | S | G | A | D | Y | L | H | L | D | V | X | D | G | H | F | V | P | N | I | T | F | G | H | P | V | V | E | S | L | R | K | Q | L | G | Q | D | P | F | F | D | X | H | X | X | V | S | K | P | E | Q | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |
|
| B |
| T | T | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |  |  | B | S | S | S | S | S |
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |
| S |
|  |  |  | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | E | A | Y | I | A | L | N | R | A | A | I | D | S | G | L | V | D | M | I | D | L | E | L | F | T | G | D | D | Q | V | K | E | T | V | A | Y | A | H | A | H | D | V | K | V | V | M | S | N | H | D | F | H | K |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |
|   |   |
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . |   |
|   |   |   |   |   |
|
| . |
|
|   |
|   |
|
|   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
W | V | K | P | X | A | V | A | G | . |
A | N | Q | Y | T | F | H | L | E | A | T | E | . |
N | P | G | A | L | I | K | D | I | R | E | N | G | X | K | V | G | L | A | I | K | P | G | T | S |
Template Known Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |  |  |  |  | T | . |
| S |  |  |  |  |  | G | G | G |
| S | . |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
| T | T | S |
|
Template Predicted Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
79 | 80 | . | . | . | . | . | . | . | |
. | . | 90 | . | . | . | . | . | . | . | . | . | |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|