Job Description P05194 Confidence 30.71% Date Thu Jan 5 10:58:42 GMT 2012 Rank 300 Aligned Residues 153 % Identity 10% Template c3aamA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Resolution 1.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		P	K	I	I	V	S	L	M	A	K	D	I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	R	V	D	H	.	.	.	Y	A	D	L	S	N	V	E	S	V	M	A	A	A	K	I	L	R	E	T	M	P	E	K	P	L	L	F	T	F	R	S	A	K	E	G	G	E	Q	A	I
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		P	R	Y	G	F	H	L	S	I	A	G	K	K	G	V	A	G	A	V	E	E	A	T	A	L	G	L	T	A	F	Q	I	F	A	K	S	P	R	S	W	R	P	R	A	L	S	P	A	E	V	E	A	F	R	A	L	R	E	A	S	G	G	L	P	A	V	I	H	A	S	Y	L	V	N	L	G	A	E	G	E
Template Known Secondary structure							B					S	T	T													T		S						S	S		T	T			S																			T	T										T	T			T	T		S	S	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																.	.	.	.															.	.	.	.	.	.
Query SS confidence																.	.	.	.															.	.	.	.	.	.
Query Sequence		S	T	E	A	Y	I	A	L	N	R	A	A	I	D	.	.	.	.	S	G	L	V	D	M	I	D	L	E	L	F	T	G	.	.	.	.	.	.	D	D	Q	V	K	E	T	V	A	Y	A	H	A	H	D	V	K	V	V	M	S	N	H	D	F	H	K	T	P	E	A	E	E	I	I	A	R	L	R	K	M	Q
Query Conservation																.	.	.	.															.	.	.	.	.	.
Alig confidence																.	.	.	.			.												.	.	.	.	.	.
Template Conservation																						.
Template Sequence		L	W	E	K	S	V	A	S	L	A	D	D	L	E	K	A	A	L	L	G	.	V	E	Y	V	V	V	H	P	G	S	G	R	P	E	R	V	K	E	G	A	L	K	A	L	R	L	A	G	V	R	S	R	P	V	L	L	V	E	N	T	A	G	G	G	E	K	V	G	A	R	F	E	E	L	A	W	L	V	A
Template Known Secondary structure																					T	.										B	S																	T			S	S	S											T	T	B	S			S									T
Template Predicted Secondary structure																						.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	A	D	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	P	L	Q	V	C
Template Known Secondary structure		T	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions