Job Description P05194 Confidence 97.15% Date Thu Jan 5 10:58:42 GMT 2012 Rank 32 Aligned Residues 224 % Identity 18% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		K	T	V	T	V	K	D	L	V	I	G	T	G	A	P	K	I	I	V	S	L	M	A	.	.	.	K	D	I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	R	V	D	H	Y	A	D	L	S	N	V	E	S	V	M	A	A	A	K	I	L	R	E	T	M	P	E	K	P	L	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.																														.	.	.
Template Conservation																																																									.	.	.
Template Sequence		P	T	V	Y	V	G	R	V	P	I	G	G	A	H	P	I	A	V	Q	S	M	T	N	T	P	T	R	D	V	E	A	T	T	A	Q	V	L	E	L	H	R	A	G	S	E	I	V	R	L	T	V	N	D	E	E	.	.	.	A	A	K	A	V	P	E	I	K	R	R	L	L	A	E	G	V	E	V	P	L	V
Template Known Secondary structure							T	T				S	T	T	S										S		T	T															T	T		S								S			.	.	.			T	T											T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																				.											.	.	.	.	.	.	.	.
Query SS confidence																										.	.																																				.											.	.	.	.	.	.	.	.
Query Sequence		F	T	F	R	S	A	K	E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	.	.	A	A	I	D	S	G	L	V	D	M	I	D	L	E	L	F	T	G	D	D	Q	V	K	E	T	V	A	Y	A	H	A	H	D	V	K	.	V	V	M	S	N	H	D	F	H	K	.	.	.	.	.	.	.	.
Query Conservation																										.	.																																				.											.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.								.	.							.													.	.	.	.													.											.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.	.
Template Sequence		G	D	F	H	F	.	.	.	.	.	.	.	.	.	.	.	.	N	G	H	L	L	L	R	K	Y	P	K	M	A	E	A	.	L	D	K	F	R	I	N	P	E	H	F	A	.	.	.	.	E	M	I	R	I	A	M	D	L	G	K	P	V	R	I	G	A	N	W	G	S	L	D	P	A	L	L	T	E	L	M
Template Known Secondary structure					S	S	.	.	.	.	.	.	.	.	.	.	.	.																.		S								T	T		.	.	.	.								T	T	T									G	G	G	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.	.
Template SS confidence
		86	.	.	.	90													.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
																	148	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.																																																						.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.																																																						.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	.	.	E	A	E	E	I	I	A	R	L	R	K	M	Q	S	F	D	A	D	I	P	K	I	A	L	M	P	Q	S	T	S	D	V	L	T	L	L	A	A	T	L	E	M	Q	E	Q	Y	A	D	R	P	I	I	T	.	.	.	.	M	S	M	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.																																																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.																									.																						.							.	.	.	.
Template Conservation																																													.																						.
Template Sequence		D	R	N	A	S	R	P	E	P	K	S	A	H	E	V	V	L	E	A	L	V	E	S	A	V	R	A	Y	E	A	A	L	E	M	G	L	G	E	D	K	L	V	L	.	S	A	K	V	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	.	Q	A	P	L	H	L	G	L	T	E	A	G	M	G
Template Known Secondary structure							S	S	S																														G	G	G				.				B	S	S																.		S		B				B					S	S
Template Predicted Secondary structure																																													.																						.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		K	T	G	V	I	S	R	L	A	G	E	V	F	G	S	A	A	T	F	G	A	V	K	K	.	.	.	.	.	A	S	A	P	G	Q	I	S	V	N	D	L	R	T	V	L	T	I	L
Query Conservation																										.	.	.	.	.
Alig confidence												.	.													.	.	.	.	.
Template Conservation												.	.
Template Sequence		V	K	G	I	V	A	S	A	A	A	.	.	L	A	P	L	L	L	E	G	I	G	D	T	I	R	V	S	L	T	P	S	P	K	E	P	R	T	K	E	V	E	V	A	Q	E	I	L
Template Known Secondary structure												.	.								T			S									S	T	T			T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions