Job Description P05194 Confidence 54.94% Date Thu Jan 5 10:58:42 GMT 2012 Rank 233 Aligned Residues 116 % Identity 23% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.		.																		.	.	.
Query SS confidence																																											.	.	.	.	.		.																		.	.	.
Query Sequence		K	P	L	L	F	T	F	R	S	A	K	E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	A	A	I	D	S	G	L	V	D	M	I	D	L	.	.	.	.	.	E	.	L	F	T	G	D	D	Q	V	K	E	T	V	A	Y	A	H	A	.	.	.	H	D	V	K	V	V	M	S	N	H	D	F
Query Conservation																																											.	.	.	.	.		.																		.	.	.
Alig confidence														.	.	.	.																			.							.	.	.	.	.		.																		.	.	.											.	.
Template Conservation														.	.	.	.																			.																																												.	.
Template Sequence		I	P	P	V	S	T	I	F	T	A	D	G	.	.	.	.	Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	.	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	.	.
Template Known Secondary structure									B		T	T	S	.	.	.	.	S	B															T	T	.		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								.	.
Template Predicted Secondary structure														.	.	.	.																			.																																												.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		H	K	T	P	E	A	E	E	I	I	A	R	L	R	K	M	Q	S	F	D	A	D	I	P	K	I	A	L	M	P	Q	.	.	.	.	S	T	S	D	V	L	T	L	L	A	A	T	L	E	M	Q	E	Q	Y	A	D	R	P	I	I	T	M	S
Query Conservation																																	.	.	.	.
Alig confidence		.	.																							.							.	.	.	.																.	.	.	.
Template Conservation		.	.																							.																										.	.	.	.
Template Sequence		.	.	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	.	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	.	.	.	.	V	T	L	P	V	X	L	Y	N
Template Known Secondary structure		.	.	S	S																T		S			.						S	S	S																		.	.	.	.		S	S
Template Predicted Secondary structure		.	.																							.																										.	.	.	.
Template SS confidence
				91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions