Job Description P05194 Confidence 94.26% Date Thu Jan 5 10:58:42 GMT 2012 Rank 89 Aligned Residues 205 % Identity 16% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		D	I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	.	R	V	D	H	Y	A	D	L	S	N	V	E	S	V	M	A	A	A	K	I	L	R	E	T	M	P	E	K	P	L	L	F	T	F	R	S	A	K	E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	A	A
Query Conservation																								.
Alig confidence																								.																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	A	D	K	I	R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	.	G	V	T	Y	A	A	L	A	P	N	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	A
Template Known Secondary structure																T	T		S								S		T	T	T		G	G	G	T	T								S				T	.	T	S								S				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.															.	.	.	90
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		I	D	S	G	L	V	D	M	I	D	L	E	L	F	T	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	V	K	E	T	V	A	Y	A	H	A	H	D	V	K	V	V	M	S	N	H	D	F	H	K	T	P	E	A	.	.	.	.	.	E	E	I	I	A	R	L	R	K	M	Q	S	F
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation						.
Template Sequence		L	E	S	G	.	V	K	E	V	A	V	F	A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	V	D	P	R	Q	V	A	W	V	A	R	E	L	Q	Q	M
Template Known Secondary structure				T	T	.										S										S	S																			T	T										T	T		B	T	T	T	B																	T
Template Predicted Secondary structure						.
Template SS confidence
		91	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.
Predicted Secondary structure														.	.																												.	.	.																										.	.	.	.							.
Query SS confidence														.	.																												.	.	.																										.	.	.	.							.
Query Sequence		D	A	D	I	P	K	I	A	L	M	P	Q	.	.	S	T	S	D	V	L	T	L	L	A	A	T	L	E	M	Q	E	Q	Y	A	D	R	P	I	I	T	M	.	.	.	S	M	A	K	T	G	V	I	S	R	L	A	G	E	V	F	G	S	A	A	T	F	G	A	V	.	.	.	.	K	K	A	S	A	P	.
Query Conservation														.	.																												.	.	.																										.	.	.	.							.
Alig confidence														.	.													.	.	.										.			.	.	.																										.	.	.	.							.
Template Conservation																												.	.	.										.
Template Sequence		G	C	Y	E	V	S	L	G	D	T	I	G	V	G	T	A	G	A	T	R	R	L	I	E	A	V	.	.	.	A	S	E	V	P	R	E	R	L	.	A	G	H	F	H	D	T	Y	G	Q	A	L	A	N	I	Y	A	S	L	L	E	G	I	A	V	F	D	S	S	V	A	G	L	G	G	C	P	Y	A	K	G
Template Known Secondary structure		T		S							S	S	S															.	.	.	T	T	T	S		G	G	G		.					B		T	T	S												T	T							B	G	G	G			B		G	G	G	T	T
Template Predicted Secondary structure																												.	.	.										.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
				235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	Q	I	S	V	N	D	L	R	T	V	L	T	I	L	H
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	T	G	N	V	A	S	E	D	V	L	Y	L	L	N	G	L	E
Template Known Secondary structure			B		B		B											T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions