Job Description P05194 Confidence 97.45% Date Thu Jan 5 10:58:42 GMT 2012 Rank 25 Aligned Residues 226 % Identity 13% Template c1xuzA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																									.	.	50	.	.	.
Predicted Secondary structure															.												.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.												.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	V	T	V	K	D	L	V	I	G	T	G	.	A	P	K	I	I	V	S	L	M	A	K	.	.	.	D	I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	H	Y	A
Query Conservation															.												.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.												.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	F	K	I	G	N	R	S	V	G	Y	N	H	E	P	L	I	I	C	E	I	G	I	N	H	E	G	S	L	K	T	A	F	E	M	V	D	A	A	Y	N	A	G	A	E	V	V	K	H	Q	T	H	I	V	E	D	E	M	S	D	E	A	K	Q	V	I	P	G	N	A	D	V	S	I	Y	E	I	M	E
Template Known Secondary structure							T	T					T	T	S										T	T	T	T	T																T		S															G	G	G	G	G				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	S	N	V	E	S	V	M	A	A	A	K	I	L	R	E	T	M	P	E	K	P	L	L	F	T	F	R	S	A	K	E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	A	A	I	D	S	G	L	V	D	M	I	D	L	E	L	F	T	G	D	D	Q	V	K	E	T	V	A	Y	A	H	A
Query Conservation
Alig confidence																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.									.								.	.
Template Conservation																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.									.								.	.
Template Sequence		R	C	A	L	N	E	E	D	E	I	K	L	K	E	Y	V	E	S	K	.	G	M	I	F	I	S	T	P	F	S	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	R	L	Q	R	M	D	.	I	P	A	Y	K	I	G	.	.	S	G	E	C	N	N	Y	P	L	I	K	L	V	A	S
Template Known Secondary structure																				T	.	T									S				.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	.		S						.	.	G	G	G	T	T										T
Template Predicted Secondary structure																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.									.								.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.															.	.	.	120	.	.	.	.		.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		H	D	V	K	V	V	M	S	N	H	D	F	H	K	T	P	E	A	E	E	I	I	A	R	L	R	K	M	Q	S	F	D	A	D	I	P	K	I	A	L	M	P	Q	.	.	S	T	S	D	V	L	T	L	L	A	A	T	L	E	M	Q	E	Q	Y	A	D	R	P	I	I	T	M	S	M	A	K	T	G	V	I
Query Conservation																																													.	.
Alig confidence												.	.	.	.																														.	.									.															.
Template Conservation												.	.	.	.																																								.															.
Template Sequence		F	G	K	P	I	I	L	S	T	G	.	.	.	.	M	N	S	I	E	S	I	K	K	S	V	E	I	I	R	E	A	G	V	P	Y	A	L	L	H	C	T	N	I	Y	P	T	P	Y	E	D	V	R	L	.	G	G	M	N	D	L	S	E	A	F	P	D	A	I	.	I	G	L	S	D	H	T	L	D	N	Y
Template Known Secondary structure		T		S							T	.	.	.	.	T																	T												S	S								T	.	T										T	T	S		.							S	S	S	S
Template Predicted Secondary structure												.	.	.	.																																								.															.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																				.							.	.	.	.	.
Query SS confidence																				.							.	.	.	.	.
Query Sequence		S	R	L	A	G	E	V	F	G	S	A	A	T	F	G	A	V	K	.	K	A	S	A	P	G	.	.	.	.	.	Q	I	S	V	N	D	L	R	T	V	L	T	I	L	H	Q
Query Conservation																				.							.	.	.	.	.
Alig confidence																				.							.	.	.	.	.
Template Conservation
Template Sequence		A	C	L	G	A	V	A	L	G	G	S	I	L	E	R	H	F	T	D	R	M	D	R	P	G	P	D	I	V	C	S	M	N	P	D	T	F	K	E	L	K	Q	G	A	H	A
Template Known Secondary structure										T								B		S		T	T			S	T	T	G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions