Job Description P05194 Confidence 94.83% Date Thu Jan 5 10:58:42 GMT 2012 Rank 80 Aligned Residues 223 % Identity 15% Template c1vs1B_ PDB info PDB header:transferase Chain: B: PDB Molecule:3-deoxy-7-phosphoheptulonate synthase; PDBTitle: crystal structure of 3-deoxy-d-arabino-heptulosonate-7-2 phosphate synthase (dahp synthase) from aeropyrum pernix3 in complex with mn2+ and pep Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																			.																																											.	.	.	.	.	.	.
Query SS confidence																			.																																											.	.	.	.	.	.	.
Query Sequence		M	K	T	V	T	V	K	D	L	V	I	G	T	G	A	P	K	.	I	I	V	S	L	M	A	K	D	I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	R	V	D	H	Y	A	D	L	S	N	V	E	.	.	.	.	.	.	.	S	V	M	A	A	A	K	I	L	R	E	T	M
Query Conservation																			.																																											.	.	.	.	.	.	.
Alig confidence																			.																												.	.														.	.	.	.	.	.	.
Template Conservation																																															.	.
Template Sequence		E	T	V	V	E	V	E	G	V	R	I	G	G	G	S	K	A	V	I	A	G	P	C	S	V	E	S	W	E	Q	V	R	E	A	A	L	A	V	K	E	A	G	A	H	M	.	.	L	R	G	G	A	F	K	P	R	T	S	P	Y	S	F	Q	G	L	G	L	E	G	L	K	L	L	R	R	A	G	D	E	A
Template Known Secondary structure								T	T				B	T	T	B								S	B																		T		S		.	.				B	S	S				S	S	T	T	S					T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		P	E	K	P	L	L	F	T	F	R	S	A	K	E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	A	A	I	D	S	G	L	V	D	M	I	D	L	E	L	F	T	G	D	D	Q	V	K	E	T	V	A	Y	A	H	A	H	D	V	K	V	V	M	S	N	H	D	F	H	K	T	.	P	E	A
Query Conservation																																																																														.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.																					.	.	.	.		.
Template Conservation		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.																					.	.	.	.
Template Sequence		.	G	L	P	V	V	T	E	V	L	D	P	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	T	V	S	R	Y	.	.	A	D	M	L	Q	I	G	A	R	N	M	Q	.	.	N	F	P	L	L	R	E	V	G	R	S	G	K	P	V	L	L	K	R	G	.	.	.	.	F	G	N	T	V
Template Known Secondary structure		.	T										G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.		S						G	G	G	T	T	.	.																					.	.	.	.	T	T
Template Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.													.	.																					.	.	.	.
Template SS confidence
			102	.	.	.	.	.	.	.	110	.	.	.	.															.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																						.	.	.	.																																							.	.	.	.	.
Query SS confidence																						.	.	.	.																																							.	.	.	.	.
Query Sequence		E	E	I	I	A	R	L	R	K	M	Q	S	F	D	A	D	I	P	K	I	.	.	.	.	A	L	M	P	Q	S	T	S	D	V	L	T	L	L	A	A	T	L	E	M	Q	E	Q	Y	A	D	R	P	I	I	T	M	S	M	A	K	T	G	.	.	.	.	.	V	I	S	R	L	A	G	E	V	F	G	S	A
Query Conservation																						.	.	.	.																																							.	.	.	.	.
Alig confidence																						.	.	.	.																									.														.	.	.	.	.
Template Conservation																																																		.
Template Sequence		E	E	L	L	A	A	A	E	Y	I	L	L	E	G	N	W	Q	V	V	L	V	E	R	G	I	R	T	F	E	P	S	T	R	F	T	L	D	V	A	A	V	A	V	L	K	E	A	T	.	H	L	P	V	I	V	D	P	S	H	P	A	G	R	R	S	L	V	P	A	L	A	K	A	G	L	A	A	G	A	D
Template Known Secondary structure														T	T											B			S			S	S	S	S	B													B	.	S	S												S	G	G	G											T	T		S
Template Predicted Secondary structure																																																		.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
				223	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.								.	.	.	.
Query SS confidence		.	.								.	.	.	.
Query Sequence		.	.	A	T	F	G	A	V	K	.	.	.	.	K	A	S	A	P	G	Q	I	S	V	N	D	L	R	T	V	L	T	I	L
Query Conservation		.	.								.	.	.	.
Alig confidence		.	.								.	.	.	.
Template Conservation
Template Sequence		G	L	I	V	E	V	H	P	N	P	E	E	A	L	S	D	A	K	Q	Q	L	T	P	G	E	F	A	R	L	M	G	E	L
Template Known Secondary structure							B		S	S	G	G	G		S	S		G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions