Job Description P05194 Confidence 94.68% Date Thu Jan 5 10:58:42 GMT 2012 Rank 84 Aligned Residues 137 % Identity 20% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																										.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		I	A	S	V	K	S	E	A	L	A	Y	R	E	A	D	F	D	I	L	E	W	R	V	D	.	.	.	.	.	.	.	H	Y	A	D	L	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	S	V	M	A	A	A	K	I	L	R	E	T	M	P	.	E	K	P	L	L	F	T	F	R	S	A	K
Query Conservation																										.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																										.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T
Template Known Secondary structure															T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.															.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		E	G	G	E	Q	A	I	S	T	E	A	Y	I	A	L	N	R	A	A	I	D	S	G	L	V	D	M	I	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	F	T	G	D	D	Q	V	K	E	T	V	A	Y	A	H	A	.	H	D	V	K	V	V	M	S	N	H	D	F	H	K	T	P	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.											.	.					.
Template Conservation																									.																																																		.	.					.
Template Sequence		V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	.	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	.	.	Y	T	D	P	.
Template Known Secondary structure		S	S		T	T	S			T	T	T										T	T	T	.		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S						S		.	.					.
Template Predicted Secondary structure																									.																																																		.	.					.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		A	E	E	I	I	A	R	L	R	K	M	Q	S	F	D	.	A	D	I	P	K	I	A
Query Conservation																	.
Alig confidence		.	.	.	.	.											.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A
Template Known Secondary structure		.	.	.	.	.									T	T	S		S	B				S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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