Job Description P33235 Confidence 99.36% Date Thu Jan 5 11:51:35 GMT 2012 Rank 3 Aligned Residues 288 % Identity 15% Template d1wlga_ SCOP info Flagellar hook protein flgE Flagellar hook protein flgE Flagellar hook protein flgE Resolution 1.80

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		L	R	A	A	Q	T	Q	S	S	G	L	T	A	R	Y	E	.	.	.	.	Q	M	S	K	I	D	N	M	L	S	T	S	T	S	S	L	A	T	Q	M	Q	D	F	F	T	S	L	Q	T	L	V	S	N	A	E	D	P	A	A	R	Q	A	L	I	G	K	S	E	G	L	V	N	Q	F	K	T	T	D	Q	Y
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	V	A	I	S	Q	N	G	F	F	R	L	V	D	S	N	G	S	V	F	Y	S	R	N	G	Q	F	K	L	D	E	N	R	N	L	V	N	M	Q	G	M	Q	L	T	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S								T	T							S								T	T	S					T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	D	Q	D	K	Q	V	N	I	A	I	G	A	S	V	D	Q	I	N	N	Y	A	K	Q	I	A	S	L	N	D	Q	I	S	R	L	T	G	V	G	A	G	A	S	P	N	N	L	L	D	Q	R	D	Q	L	V	S	E	L	N	Q	I	V	G	V	E	V	S	V	Q	D	G	G	T	Y	N	I	T	M	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																															.	.
Template Conservation		.	.	.	.	.	.	.	.																															.	.
Template Sequence		.	.	.	.	.	.	.	.	P	A	T	G	T	P	P	T	I	Q	Q	G	A	N	P	A	P	I	T	I	P	N	T	L	M	A	A	K	S	T	.	.	T	T	A	S	M	Q	I	N	L	N	S	T	D	P	V	P	S	K	T	P	F	S	V	S	D	A	D	S	Y	N	K	K	G	T	V	T	V	Y	D	S
Template Known Secondary structure		.	.	.	.	.	.	.	.			B	T	T	T	T	B			T	T													B			B			.	.											T	T					S	S		S			T	T		T	T	S		S										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																															.	.
Template SS confidence
										119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Y	S	L	V	Q	G	S	T	A	R	Q	L	A	A	V	P	S	S	A	D	P	S	R	T	T	V	A	Y	V	D	G	T	A	G	N	I	E	I	P	E	K	L	L	N	T	G	S	L	G	G	I	L	T	F	R	S	Q	D	L	D	Q	T	R	N	T	L	G	Q	L	A	L	A	F	A	E	A	F	N
Query Conservation
Alig confidence							.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	N	A	H	.	.	.	.	.	D	M	N	V	Y	F	V	K	T	K	D	N	E	W	A	V	Y	T	H	D	S	S	D	P	A	A	T	A	P	T	T	A	S	T	T	L	K	F	N	E	N	G	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T					.	.	.	.	.											T	T									T	T		T	T						S		S							T	T	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	H	K	A	G	F	D	A	N	G	D	A	G	E	D	F	F	A	I	G	K	P	A	V	L	Q	N	T	K	N	K	G	D	V	A	I	G	A	T	V	T	D	A	S	A	V	L	A	T	D	Y	K	I	S	F	D	N	N	Q	W	Q	V	T	R	L	A	S	N	T	T	F	T	V	T	P	D	A	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	G	G	T	V	N	I	T	T	G	T	I	N	G	A	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													B	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	F	D	G	L	E	L	T	F	T	G	T	P	A	V	N	D	S	F	T	L	K	P	V	S	D	A	I	V	N	M	D	V	L	I	T	D	E	A	K	I	A	M	A	S	E	E	D	A	G	D	S	D	N	R	N	G	Q	A	L	L	D	L	Q	S	N	S	K	T	V	G	G	A	K	S	F	N	D
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	A	T	F	S	L	S	F	L	N	S	M	Q	Q	N	T	G	A	N	N	I	V	A	T	N	Q	N	G	Y	K	P	G	D	L	V	S	Y	Q	I	N	N	D	G	T	V	V	G	N	Y	S	N	E	Q	E	Q	V	L	G	Q	I	V	L	A	N	F	A	N	N	E	G	L	A	S	Q	G	D	N	.	.	.
Template Known Secondary structure										T	T					S	S													B			B									T	T								T	T	S														S		G	G	G	S				S	T	T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	A	S	L	V	S	D	I	G	N	K	T	A	T	L	K	T	S	S	A	T	Q	G	N	V	V	T	Q	L	S	N	Q	Q	Q	S	I	S
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	W	A	A	T	Q	A	S	G	V	A	L	L	G	T	A	G	S	G	N	F	G	K	L	T	N	G	A	L	E	A	S
Template Known Secondary structure		.	.	.	.	.	.						T	T	T								T	T	B	T	T	B				S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions