Job Description P33235 Confidence 95.91% Date Thu Jan 5 11:51:35 GMT 2012 Rank 4 Aligned Residues 405 % Identity 14% Template d1ucua_ SCOP info Phase 1 flagellin Phase 1 flagellin Phase 1 flagellin Resolution 4.00

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	N	A	E	D	P	A	A	R	Q	A	L	I	G	K	S	E	G	L	V	N	Q	F	K	T	T	D	Q	Y	L	R	D	Q	D	K	Q	V	N	I	A	I	G	A	S	V	D	Q	I	N	N	Y	A	K	Q	I	A	S	L	N	D	Q	I	S	R	L	T	G	V	G	A	G	A	S	P	N	N	L	L	D
Query Conservation
Alig confidence																																							.	.	.	.	.																		.	.
Template Conservation																																							.	.	.	.	.																		.	.
Template Sequence		K	D	D	A	A	G	Q	A	I	A	N	R	F	T	A	N	I	K	G	L	T	Q	A	S	R	N	A	N	D	G	I	S	I	A	Q	T	T	.	.	.	.	.	E	G	A	L	N	E	I	N	N	N	L	Q	R	V	R	E	L	.	.	A	V	Q	S	A	N	S	T	N	S	Q	S	D	L	D	S	I	Q	A
Template Known Secondary structure			S	S																																			.	.	.	.	.																		.	.					T		T	T
Template Predicted Secondary structure																																							.	.	.	.	.																		.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	D	Q	L	V	S	E	L	N	Q	I	V	G	V	E	V	S	V	Q	D	G	G	T	Y	N	I	T	M	A	N	G	Y	S	L	V	Q	G	S	T	A	R	Q	L	A	A	V	P	S	S	A	D	P	S	R	T	T	V	A	Y	V	D	G	T	A	G	N	I	E	I	P	E	K	L	L	N	T	G	S	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		E	I	T	Q	R	L	N	E	I	D	R	V	S	G	Q	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	F	N	G	V	K	V	L	A	Q	D	N	T	L	T	I	Q	V	.	.	G	A	N	D	G	E	T	I	D	I	D	L	K	Q	I	N	S	Q	T	L	G	L	D	T	L	N	V	Q	Q	K	Y	K
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B		T	T	T	S									.	.	S	S	S	T	T											S	T	T	T	T	T		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130													.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	I	L	T	F	R	S	Q	D	L	D	Q	T	R	N	T	L	G	Q	L	A	L	A	F	A	E	A	F	N	T	Q	H	K	A	G	F	D	A	N	G	D	A	G	E	D	F	F	A	I	G	K	P	A	V	L	Q	N	T	K	N	K	G	D	V	A	I	G	A	T	V	T	D	A	S	A	V	L	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	D	T	A	A	T	V	T	G	Y	A	D	T	T	I	A	L	D	N	S	T	F	K	A	S	A	T	G	L	G	G	T	D	Q	K	I	D	G	D	L	K	F	D	D	T	T	G	K	Y	Y	A	K	V	T	V	T	G	G	T	G	K	D	G	Y	Y	E	V	S	V	D	K	T	N	G	E	V	T	L	A
Template Known Secondary structure											S									B		T	T	S	T	T	T		G	G	G		S	S						S	S					T	T	T	T										T		S	S											T	T	T		B				S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	K	I	S	F	D	N	N	Q	W	Q	V	T	R	L	A	S	N	T	T	F	T	V	T	P	D	A	N	G	K	V	A	F	D	G	L	E	L	T	F	T	G	T	P	A	V	N	D	S	F	T	L	K	P	V	S	D	A	I	V	N	M	D	V	L	I	T	D	E	A	K	I	A	M	A	S	E	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	A	T	S	P	L	T	G	G	L	P	A	T	A	T	E	D	V	K	N	V	Q	V	A	N	A	D	L	T	E	A	K	A	A	L	T	A	A	G	V	T	G	T	A	S	V	V	K	M	S	Y	T	D	N	N	G	K	T	I	D	G	G	L	A	V	K	V	G	D	D	Y	Y	S	A	T	Q	N	K	D
Template Known Secondary structure		T	T		S	S			T	T	S	S		T	T						S						G	G	G	T										T	T			S												T	T	S												T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.																																																.	.	.	470	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	D	S	D	N	R	N	G	Q	A	L	L	D	L	Q	S	N	S	K	T	V	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	N	D	A	Y	A
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	I	S	I	N	T	T	K	Y	T	A	D	D	G	T	S	K	T	A	L	N	K	L	G	G	A	D	G	K	T	E	V	V	S	I	G	G	K	T	Y	A	A	S	K	A	E	G	H	N	F	K	A	Q	P	D	L	A	E	A	A	A	T	T	T	E	N	P	L	Q	K	I	D	A	A	L	A	Q	V	D
Template Known Secondary structure		S						B						S	S	S	S					B					S	T	T	S								T	T									T	T		B	T	T	T	S									S			S	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	S	D	I	G	N	K	T	A	T	L	K	T	S	S	A	T	Q	G	N	V	V	T	Q	L	S	N	Q	Q	Q	S	I	S	G	V	N	L	D	E	E	Y	G	N	L	Q	R	F	Q	Q	Y	Y	L	A	N	A	Q	V	L	Q	T	A	N	A	I	F	D	A	L	I	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	R	S	D	L	G	A	V	Q	N	R	F	N	S	A	I	T	N	L	G	N	T	V	N	N	L	T	S	V	R	S	R	I	E	D	S	D	Y	A	T	E	V	S	N	M	S	R	A	Q	I	L	Q	Q	A	G	T	S	V	L	A	Q	A	N	Q	V	P	Q	N	V	L	S	L
Template Known Secondary structure																																				S				S																																	T
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.