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Job DescriptionP33235
Confidence1.83%DateThu Jan 5 11:51:35 GMT 2012
Rank81Aligned Residues16
% Identity31%Templatec3hsbB_
PDB info PDB header:rna binding protein/rnaChain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.
Predicted Secondary structure 

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Query Sequence  NGVYVSGVQREYDAFI
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Template Conservation 

 

 
 
  

 

Template Sequence  NGFQLRGQVKGFDNFT
Template Known Secondary structure  TS

SS
Template Predicted Secondary structure 



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   27..30.........40..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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