Return to main results Retrieve Phyre Job Id

Job DescriptionP37678
Confidence100.00%DateThu Jan 5 11:56:52 GMT 2012
Rank12Aligned Residues206
% Identity17%Templatec3ldvB_
PDB info PDB header:lyaseChain: B: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: 1.77 angstrom resolution crystal structure of orotidine 5'-2 phosphate decarboxylase from vibrio cholerae o1 biovar3 eltor str. n16961
Resolution1.77 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70. ........80
Predicted Secondary structure 




















...

Query SS confidence 



































































. . .








Query Sequence  PLLQLALDHSSLEAAQRDVTLLKDSVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVADAGET. . . LAQQAFGAG
Query Conservation    
 



    
    
       

 



  
    
   
  
        
  
 
  
    ...        
Alig confidence 

















































..















...








Template Conservation    
 



     
 
         
  



       
   
  
   ..   
  
 

 


 
           
Template Sequence  PKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKR. . GFSVFLDLKFHDIPNTCSKAVKAAAELG
Template Known Secondary structure 



S
TTS
TTS
T..T


S
T
Template Predicted Secondary structure 














..









Template SS confidence 















































































   4.....10.........20.........30.........40.........50... ......60.........70.........80.
 
   81........90.........100........ .110.........120.........130.. .......140.........150..
Predicted Secondary structure 









....








....











Query SS confidence 



























. . . .























. . . .



















Query Sequence  ANWMTIICAAPLATVEKGHAMAQRCGGE. . . . IQIELFGNWTLDDARDWHRIGVRQ. . . . AIYHRGRDAQASGQQWGEAD
Query Conservation 

 
 

       
          
  ....  
 
                   ....
           
       
Alig confidence 



























....























....



















Template Conservation 

 



   
   
      
   
      
 
  


                  
          
  
 
     
Template Sequence  VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQE
Template Known Secondary structure 
SGGG
GGGGGGS

S
TT

TT

S
TT



TTT
Template Predicted Secondary structure 



























Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   153......160.........170 .........180.........190.........200.........210.
Predicted Secondary structure 





....












Query SS confidence 

















. . . .








































Query Sequence  LARMKALSDIGLELSITG. . . . GITPADLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQI
Query Conservation     

        
 
 
....

           


 






  
 

   
      
Alig confidence 

















....








































Template Conservation 
  

         
 


   
    
       


 






  
 

  

      
Template Sequence  ASLLKQHLGREFKLVTPGIRPAQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL
Template Known Secondary structure 
TTS





TTS

T
S
T
SST
Template Predicted Secondary structure 























Template SS confidence 






























































   162.......170.........180.........190.........200.........210.........220....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions