Job Description P37678 Confidence 99.94% Date Thu Jan 5 11:56:52 GMT 2012 Rank 34 Aligned Residues 209 % Identity 17% Template c3l52A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of putative orotidine 5'-phosphate2 decarboxylase from streptomyces avermitilis ma-4680 Resolution 1.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence		S	R	P	L	L	Q	L	A	L	D	H	S	S	L	E	A	A	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	T	L	L	K	D	S	V	D	I	V	E	A	G	T	I	L	C	L	N	E	G	L	G	A	V	K	A	L	R	E	Q	.	.	.	.	.	C	P	D	K	I	I	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence												.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation												.
Template Sequence		D	R	G	P	L	C	V	G	I	D	.	P	H	A	S	L	L	A	D	W	G	L	S	D	D	V	A	G	L	E	R	F	S	R	T	V	V	E	A	L	G	E	H	V	A	V	F	K	P	Q	S	A	F	F	E	R	F	G	S	R	G	V	A	V	L	E	K	T	V	A	E	A	R	A	A	G	A	L	V	V
Template Known Secondary structure					S							.									T	T			S	S																T	T	T		S					B						T	T																		T	T
Template Predicted Secondary structure												.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	W	K	V	A	D	A	G	E	T	L	A	Q	Q	A	F	G	A	.	.	.	.	.	.	.	G	A	N	W	M	T	I	I	C	A	A	P	L	A	T	V	E	K	G	H	A	M	A	Q	R	C	G	G	E	I	Q	I	E	L	F	G	N	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	D	A	K	R	G	D	I	G	S	T	X	A	A	Y	A	E	A	F	L	R	K	D	S	P	L	F	S	D	A	L	T	V	S	P	Y	L	G	Y	G	S	L	R	P	A	V	E	L	A	R	E	S	G	A	G	L	F	V	L	A	L	T	S	N	P	E	G	G	E	V	Q	H	A	V	R	T	D	G	R	D
Template Known Secondary structure																					S	S	T	T	S	T	T			S							T	T		G	G	G	G											T											S	T	T	T					T		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
				119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190
Predicted Secondary structure		.	.																																																					.																	.	.	.	.	.
Query SS confidence		.	.																																																					.																	.	.	.	.	.
Query Sequence		.	.	L	D	D	A	R	D	W	H	R	I	G	V	R	Q	A	I	Y	H	R	G	R	D	A	Q	A	S	G	Q	Q	W	G	E	A	D	L	A	R	M	K	A	L	S	D	I	G	L	E	L	S	I	T	G	.	G	I	T	P	A	D	L	P	L	F	K	D	I	R	V	K	.	.	.	.	.	A	F	I	A
Query Conservation		.	.																																																					.																	.	.	.	.	.
Alig confidence		.	.														.	.	.	.	.	.																																		.																	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		V	A	A	T	X	L	A	H	L	A	A	E	N	A	G	.	.	.	.	.	.	E	E	P	L	G	S	F	G	A	V	V	G	A	T	L	G	D	L	S	S	Y	D	L	D	I	N	G	P	L	L	A	P	G	I	G	A	Q	G	A	A	P	A	D	L	P	G	V	F	G	A	A	V	R	N	V	V	P	N	V
Template Known Secondary structure														T	T	T	.	.	.	.	.	.		S	S			S							T	T		S		G	G	G	S				S	S	S							T	T	S	T	T		S	G	G	G						G	G	G	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		G	R	A	L	A	G	A	A	N	P	.	.	.	.	A	Q	V	A	G	D	F	H	A	Q	I	D	A	I	W	G	G
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		S	R	G	V	L	R	H	G	P	D	V	R	A	L	R	T	A	A	D	R	F	A	E	E	I	R	A	A	V	A	A
Template Known Secondary structure		S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions