Job Description P37678 Confidence 66.49% Date Thu Jan 5 11:56:52 GMT 2012 Rank 490 Aligned Residues 201 % Identity 12% Template c3ju2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 Resolution 1.80 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.															70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	E	A	A	Q	R	D	V	T	L	L	K	D	S	V	D	I	V	E	A	G	T	I	L	C	L	N	E	G	L	G	A	V	K	A	L	R	E	Q	C	P	D	K	I	I	V	A	D	W	K	V	A	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	A	Q	Q	A	F	G	A
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																													.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																													.
Template Sequence		G	F	A	E	A	V	D	I	C	L	K	.	.	H	G	I	T	A	I	A	P	W	R	D	Q	V	A	A	I	G	L	G	E	A	G	R	I	V	R	A	N	.	G	L	K	L	T	G	L	C	R	G	G	F	F	P	A	P	D	A	S	G	R	E	K	A	I	D	D	N	R	R	A	V	D	E	A	A	E	L
Template Known Secondary structure													.	.	T	T							B																			T	.	T				S											S	S
Template Predicted Secondary structure													.	.																													.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.															.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.										.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		G	A	N	W	M	T	I	I	C	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	T	V	E	K	G	H	A	M	A	Q	R	C	G	G	E	I	Q	I	E	L	.	.	.	.	.	.	.	.	.	F	G	N	W	T	L	D	D	A	R	D	W	H	R	I	G	V	R	Q	A	I	Y	H
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	C	L	V	L	V	A	G	G	L	P	G	G	S	K	N	I	D	A	A	R	R	M	V	V	E	G	I	A	A	V	L	P	H	A	R	A	A	G	V	P	L	A	I	E	P	L	H	P	M	Y	A	A	D	R	A	C	V	N	T	L	G	Q	A	L	D	I	C	E	T	L	G	P	G	V	G	V	A
Template Known Secondary structure		T	B	S							B				T	T																										T										G	G	G	T	T	T	T	B	S																T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.					.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.	.
Query Sequence		R	G	R	D	A	Q	A	S	G	Q	Q	W	G	E	A	D	L	A	R	M	K	A	L	S	D	I	G	L	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	G	G	I	T	P	A	D	L	P	L	F	K	D	.	I	R	V	K	A	F	I	A	G	R	.	.	.	.	A	L	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.	.
Template Conservation
Template Sequence		I	D	V	Y	H	V	W	W	D	P	D	L	A	N	Q	I	A	R	A	G	K	M	K	A	I	L	A	H	H	I	C	D	W	L	V	P	T	K	D	M	L	T	D	R	G	M	M	G	D	G	V	I	D	L	K	G	I	R	R	R	I	E	A	A	G	F	H	G	A	Q	E	V	E	I	F	S	A	D	N	W
Template Known Secondary structure								T	T		T	T											T	T									B			S	S				S	S	S	B		B		T	T	S	S	S													T	T											B	T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	N	P	A	Q	V	A	G	D	F	H	A	Q	I	D	A	I	W	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	K	R	P	A	D	E	V	I	A	T	C	V	E	R	Y	R	N	C	C	E	G
Template Known Secondary structure		G	G	S																	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions