Job Description P37678 Confidence 97.00% Date Thu Jan 5 11:56:52 GMT 2012 Rank 230 Aligned Residues 143 % Identity 20% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.																	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.	.	.
Query Sequence		A	Q	Q	A	F	G	A	G	A	N	W	M	T	I	I	C	A	A	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	V	E	K	G	H	A	M	A	Q	R	.	C	G	G	E	I	Q	I	E	L	F	G	N	W	T	.	.	.	.	.	.	.	.	L	D	D	A	R	D	W	H	R
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E
Template Known Secondary structure								T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																			.	.												.																									.	.	.	.
Query SS confidence																		.	.	.	.																			.	.												.																									.	.	.	.
Query Sequence		I	G	V	R	Q	A	I	Y	H	R	G	R	D	A	Q	A	.	.	.	.	S	G	Q	Q	W	G	E	A	D	L	A	R	M	K	A	L	S	D	.	.	I	G	L	E	L	S	I	T	G	G	I	.	T	P	A	D	L	P	L	F	K	D	I	R	V	K	A	F	I	A	G	R	A	L	A	G	.	.	.	.
Query Conservation																		.	.	.	.																			.	.												.																									.	.	.	.
Alig confidence																		.	.	.	.																			.	.												.										.															.	.	.	.
Template Conservation																																																															.
Template Sequence		A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V
Template Known Secondary structure		T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	T	T	S	S					S							G	G	G
Template Predicted Secondary structure																																																															.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
															197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	N	P	A	Q	V	A	G	D	F	H	A	Q	I	D	A	I	W	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	A	D	R	R	V	F	G	L	P	R	R	P	S	R	L	E	V	A	R	R	X	R	A	Y	L	E	E	E	V	L
Template Known Secondary structure		G	T	T					T	S			S																					T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions