 |
Job Description | P37678 | Confidence | 98.21% | Date | Thu Jan 5 11:56:52 GMT 2012 |
Rank | 132 | Aligned Residues | 118 |
% Identity | 18% | Template | c2rduA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:hydroxyacid oxidase 1; |
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
|
Resolution | 1.65 Å |
|
 |
  |   |
95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
. |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
Query Sequence |   |
V | E | K | G | H | A | M | A | Q | R | C | G | G | E | I | Q | I | E | L | F | G | N | W | T | L | D | D | A | R | D | W | H | R | I | G | V | R | Q | A | I | Y | H | R | G | R | D | A | Q | A | S | G | Q | Q | W | G | E | A | D | L | A | R | M | K | A | L | S | D | I | G | L | E | L | S | I | T | G | G | I | . |
T |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|   |
|
|
| . |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|   | . | . |   |   |   |   |
|
|   |   |
|   |   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |
|
|
|
|   |
Template Sequence |   |
W | E | D | I | K | W | L | R | R | L | T | S | L | P | I | V | A | K | G | I | . |
. |
L | R | G | D | D | A | R | E | A | V | K | H | G | L | N | G | I | L | V | S | N | H | G | A | R | Q | L | D | G | V | P | A | T | I | D | V | L | P | E | I | V | E | A | V | E | G | K | V | E | V | F | L | D | G | G | V | R | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  | . | . |
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
| G | G | G | T | S | S | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  | S | S |
|
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | |
|
. | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . |
  |
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | D | L | P | L | F | K | D | I | R | V | K | A | F | I | A | G | R | A | L | A | . |
. |
. |
. |
. |
. |
G | A | A | N | P | A | Q | V | A | G | D | F | H | A | Q | I | D | A | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   | . | . | . | . | . | . |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|   |
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
Template Sequence |   |
G | T | D | V | L | K | A | L | A | L | G | A | K | A | V | F | V | G | R | P | I | V | W | G | L | A | F | Q | G | E | K | G | V | Q | D | V | L | E | I | L | K | E | E | F | R | L | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
297 | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|