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Job DescriptionP0AGF4
Confidence99.90%DateThu Jan 5 11:28:58 GMT 2012
Rank2Aligned Residues407
% Identity12%Templatec3o7pA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD
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Template Sequence  RSYIIPFALLCSLF. . . . . FLWAVANNLNDILLPQFQ. . . . . . . . QAFFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA
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TTT.............TT

TTTTS
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   22.......30..... ....40.........50... ......60.........70.........80........
 
   87..90.........100..... ....110.........120.........130.........140.........150.........160...
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Query Sequence  SLKIAAVLFFISGVGSAWP. . . ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL
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Template Sequence  GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL. . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT
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   93......100.........110.........120.........130.........140.........150.....
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI
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Template Sequence  . . . . . . . . . NLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI
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   156...160.........170.........180.........190.........200.........210.........220......
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  MGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV
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Template Sequence  MLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV
Template Known Secondary structure  S




TTT



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   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI
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Template Sequence  CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF. . . . . . AGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT
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   307..310.........320.........330.........340.... .....350.........360.........370.........380
 
   404.....410.........420.........430.........440.........450.........460......
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Query Sequence  RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET
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Template Sequence  KYGSSFI. . VMTIIGGGIVTPVMGFVSDA. . . . . . AGNIPTAELIPALCFAVIFIFARFRSQT
Template Known Secondary structure  ..GGG......TSSGGGGTS



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   381...... ..390.........400....... ..410.........420.........430.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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