 |
Job Description | P0A9G6 | Confidence | 20.05% | Date | Thu Jan 5 11:10:09 GMT 2012 |
Rank | 235 | Aligned Residues | 82 |
% Identity | 11% | Template | c3navB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:tryptophan synthase alpha chain; |
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
|
Resolution | 2.10 Å |
|
 |
  |   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | T | L | A | Q | L | G | A | A | K | M | W | R | L | L | H | G | E | S | K | K | G | Y | I | N | S | L | G | A | L | T | G | G | Q | A | L | Q | Q | A | K | A | G | I | E | A | V | Y | L | S | G | W | Q | V | A | A | D | A | N | L | A | A | S | M | Y | P | D | Q | S | L | Y | P | A | N | S | V | P | A | V | V | E |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|   |   |
|
|   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|
|   |
|
|
|
|
|
|   |   |   |
|
|
|   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|   |
|
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
Y | L | L | S | R | A | P | V | H | A | L | L | E | R | L | Q | Q | F | D | A | P | P | A | L | L | G | F | G | I | S | E | P | A | Q | V | K | Q | A | I | E | A | G | A | A | G | A | I | S | G | S | A | V | V | K | I | I | E | T | H | . |
. |
. |
. |
. |
L | D | N | P | A | K | Q | L | T | E | L | A | N | F | T | Q |
Template Known Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |
| S | S |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | . | . | . | . | . | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
175 | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
  |
  |   |
123 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
R | I | N | N | T | F | R |
Query Conservation |   |
  |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |
|
Template Sequence |   |
A | M | K | K | A | T | K |
Template Known Secondary structure |   |
 |  |  |  | T | T | B |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
261 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|