Return to main results Retrieve Phyre Job Id

Job DescriptionP0A988
Confidence6.65%DateThu Jan 5 11:09:37 GMT 2012
Rank65Aligned Residues98
% Identity8%Templated1b77a2
SCOP infoDNA clamp DNA clamp DNA polymerase processivity factor
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   123......130.........140.........150.........160.........170.... .....180.........190..
Predicted Secondary structure 














..........








Query SS confidence 



















































. . . . . . . . . .

















Query Sequence  QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG. . . . . . . . . . HRLAVCSMPIGQSLPSHS
Query Conservation         
    
   
  
  
 
 
  
  
 

        
  




.......... 


              
Alig confidence 



















..






......
















..........











...


Template Conservation   


 


  


 

 


..  
 
  ......
     

 
 
       
   
   


  

     ... 
 
Template Sequence  VASVITEIKAEDLQQLLRVS. . RGLQIDT. . . . . . IAITNKDGKIVINGYNKVEDSGLTRPKYSLTLTDYDGSN. . . NFN
Template Known Secondary structure 

S
..TT

......TT
TTT
TT

S
S


S
...
Template Predicted Secondary structure 


..



......

















...
Template SS confidence 















































































   111........120.........130 ....... ..140.........150.........160.........170...... ...
 
   193......200.........210.........220. ........230......
Predicted Secondary structure 






..

Query SS confidence 




























. .














Query Sequence  VIVPRKGVIELMRMLDGGDNPLRVQIGSN. . NIRAHVGDFIFTSKL
Query Conservation   


 
 
 

 
 
      
 
     .. 
            
Alig confidence 







....




.










..














Template Conservation 
 
 
 

....
 
 
.



 

      
  
      
 

 
Template Sequence  FVINMANM. . . . KIQPG. NYKVMLWGAGDKVAAKFESSQVSYVIAM
Template Known Secondary structure  GGG
....


SS.
TT
SS

Template Predicted Secondary structure  ....


.








Template SS confidence 













































   180....... ..190.. .......200.........210.........220
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions