Job Description P0A988 Confidence 100.00% Date Thu Jan 5 11:09:37 GMT 2012 Rank 5 Aligned Residues 364 % Identity 23% Template c3t0pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of a putative dna polymerase iii beta subunit2 (eubrec_0002; ere_29750) from eubacterium rectale atcc 33656 at 2.263 a resolution Resolution 2.26 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V	Q	P	H	E	P	G	A	T	T	V	P	A	R	K	F	F	D	I	C	R
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		X	K	L	I	C	S	K	A	N	L	L	K	G	V	N	I	V	S	K	A	V	P	T	R	T	T	X	A	I	L	E	C	I	L	I	D	A	S	A	N	E	I	K	L	X	A	N	D	X	E	L	G	I	E	T	I	I	D	.	G	T	I	E	E	R	G	I	I	A	L	D	A	K	I	F	S	E	I	V	R
Template Known Secondary structure																			G	G	G	S		S	S		S		S	G	G	G							S	S	S	S								S	S									.
Template Predicted Secondary structure																																																												.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	P	D	N	D	V	T	I	E	T	D	A	S	F	K	T	V	I	S	C	E	K	A	K	F	N	I	I	G	K	S	G	D	D	F	S	Y	I	P	Y	V	E	R	N	E	S	I	V	L	S	Q	F	T	L	K	E	V	I	R	Q	T	I	F	S	I	A	D	N	D	N	N	K	L	X	T	G	E	L	F
Template Known Secondary structure			S		S	S								T	T								T	T								B		G	G	G	S										S															T	T	G	G	G	S		S	S	S	S	S	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	.	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		E	I	E	E	N	K	L	R	V	V	S	L	D	G	H	R	I	S	I	R	Y	I	E	X	K	N	H	Y	D	S	K	K	V	V	V	P	G	K	T	L	Q	E	I	S	K	I	I	P	G	S	A	D	E	D	V	V	I	Y	I	T	N	N	H	I	V	F	E	F	E	N	T	T	V	V	S	R	L	I	E	G
Template Known Secondary structure															S	S																																				S	S	S								T	T							T	T										S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	F	K	I	D	Q	X	L	S	S	D	Y	D	T	K	V	R	I	N	K	R	E	L	L	D	C	I	D	R	A	T	L	L	V	K	E	G	D	K	K	P	I	I	X	N	I	T	D	G	N	X	E	L	R	I	N	S	F	I	G	S	X	N	E	D	I	D	I	D	K	D	G	K	D	I	X	I	G	F
Template Known Secondary structure							G	G	G						S																			T	T			T	T											T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	D	A	A	S	Q	S	A	A	Y	V	V	M	P	M	R	L
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		N	P	K	F	F	I	D	A	L	R	V	I	D	E	E	E	V	N	L	Y	X	V	N	P	K	A	P	C	F	I	K	D	.	D	E	G	K	F	I	Y	L	I	L	P	V	N	F
Template Known Secondary structure											T	T				S							S		T	T	S							.	T	T	S
Template Predicted Secondary structure																																		.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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