Job Description P0A988 Confidence 99.97% Date Thu Jan 5 11:09:37 GMT 2012 Rank 11 Aligned Residues 219 % Identity 12% Template c3p91A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of proliferating cellular nuclear antigen from2 entamoeba histolytica Resolution 2.40 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	.	.	.	.	.	.	.	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		E	A	A	L	F	K	R	V	V	E	S	L	K	.	.	.	.	.	.	.	.	.	S	T	I	D	K	T	N	F	D	C	S	D	A	G	I	A	V	Q	C	M	D	N	S	H	V	S	L	V	S	L	L	I	E	T	D	A	F	D	E	F	Q	C	L	K	P	I	T	L	G	I	N	L	T	H	L	S	K	I
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	T	T		S								T	T									T	T	S	S	S								G	G	G							S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		204	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure												.																																			.	.
Query SS confidence												.																																			.	.
Query Sequence		M	R	M	L	D	G	G	D	N	P	.	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	.	.	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G
Query Conservation												.																																			.	.
Alig confidence												.																																			.	.																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		L	K	A	L	D	N	D	C	G	L	I	L	D	V	K	K	V	D	D	A	V	L	S	I	T	S	E	N	K	T	M	K	F	G	L	N	L	V	D	I	E	A	E	S	V	E	I	P	E	L	Q	S	D	A	I	I	T	L	S	S	A	E	F	L	K	I	T	K	D	F	S	A	L	G	D	D	S	.	.	.
Template Known Secondary structure			T	T	S		T	T	S								S	S	S	S																																		S																							S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.
Predicted Secondary structure																																	.	.	.																						.																			.
Query SS confidence																																	.	.	.																						.																			.
Query Sequence		V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	.	.	.	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	D	A	A	S	Q
Query Conservation																																	.	.	.																						.																			.
Alig confidence																		.															.	.	.																						.									.										.
Template Conservation																		.																																																.
Template Sequence		I	T	I	G	C	T	K	N	E	V	T	L	T	T	K	G	.	A	M	C	E	T	C	M	T	L	S	A	G	L	Q	I	E	H	N	K	D	V	T	A	S	F	A	L	K	Q	I	S	E	F	A	K	S	A	P	L	A	D	N	V	K	L	S	L	.	S	G	Q	A	P	L	I	M	E	F	K	G	E	A	C
Template Known Secondary structure								S	S									.	S	S																S	S															G	G	G	G	G	G		S							.		S	S	S									T	T
Template Predicted Secondary structure																		.																																																.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K	F	Y	L	A	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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