Job Description P0A988 Confidence 100.00% Date Thu Jan 5 11:09:37 GMT 2012 Rank 4 Aligned Residues 361 % Identity 30% Template c3p16A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii subunit beta; PDBTitle: crystal structure of dna polymerase iii sliding clamp Resolution 2.89 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V	Q	P	H	E	P	G	A	T	T	V	P	A	R	K	F	F	D	I	C	R
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		L	T	F	R	L	L	R	E	S	F	A	D	A	V	S	W	V	A	K	N	L	P	A	R	P	A	V	P	V	L	S	G	V	L	L	T	G	S	D	N	G	L	T	I	S	G	F	D	Y	E	V	S	A	E	A	Q	V	G	.	A	E	I	V	S	P	G	S	V	L	V	S	G	R	L	L	S	D	I	T	R
Template Known Secondary structure																			T	T	S	S		S			S	S	G	G	G	S								S	S									S	S									.				S	B
Template Predicted Secondary structure																																																												.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F
Query Conservation
Alig confidence							.																																								.
Template Conservation							.																																								.
Template Sequence		A	L	P	N	K	.	P	V	D	V	H	V	E	G	N	R	V	A	L	T	C	G	N	A	R	F	S	L	P	T	M	P	V	E	D	Y	P	T	L	P	T	L	P	E	E	.	T	G	L	L	P	A	E	L	F	A	E	A	I	S	Q	V	A	I	A	A	G	R	D	D	T	L	P	M	L	T	G	I	R	V
Template Known Secondary structure			S		S	S	.								T	T						B	T	T	B									T	T	T	S										.																	T	T	S	S			S	S	S				S
Template Predicted Secondary structure							.																																								.
Template SS confidence
		92	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																															.	.																															.	.	.	.	.	.	.
Query SS confidence																															.	.																															.	.	.	.	.	.	.
Query Sequence		E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	.	.	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	.	.	.	.	.	.	.	S	N	N	I	R	A	H	V	G	D	F	I
Query Conservation																															.	.																															.	.	.	.	.	.	.
Alig confidence																															.	.																					.										.	.	.	.	.	.	.
Template Conservation																																																					.
Template Sequence		E	I	L	G	E	T	V	V	L	A	A	T	D	R	F	R	L	A	V	R	E	L	K	W	S	A	S	S	P	D	I	E	A	A	V	L	V	P	A	K	T	L	A	E	A	A	K	A	G	I	G	.	G	S	D	V	R	L	S	L	G	T	G	P	G	V	G	K	D	G	L	L	G	I	S	G	N	G	K	R
Template Known Secondary structure					T	T									S	S										B		S	S	S	S																		T			S	.	S	S						S		S	S	S	S			S	S								S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		S	T	T	R	L	L	D	A	E	F	P	K	F	R	Q	L	L	P	T	E	H	T	A	V	A	T	M	D	V	A	E	L	I	E	A	I	K	L	V	A	L	V	A	.	D	R	G	A	Q	V	R	M	E	F	A	D	G	S	V	R	L	S	A	G	A	D	D	V	G	R	A	E	E	D	L	V	V	D	Y	A
Template Known Secondary structure								S	S					G	G	G	T			S	S		S																			T	T		.		S	S									T	T									S	S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	D	A	A	S	.	.	.	.	Q	S	A	A	Y	V	V	M	P	M	R	L
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.
Template Conservation
Template Sequence		G	E	P	L	T	I	A	F	N	P	T	Y	L	T	D	G	L	S	S	L	R	S	E	R	V	S	F	G	F	T	T	A	G	K	P	A	L	L	R	P	V	S	G	D	A	V	S	T	D	Y	V	Y	L	L	M	P	V	R	L
Template Known Secondary structure			S																		S		S	S							S		T	T	S													S	S	S								B
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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