Job Description P0A988 Confidence 99.95% Date Thu Jan 5 11:09:37 GMT 2012 Rank 20 Aligned Residues 218 % Identity 15% Template c3lx2A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase sliding clamp 2; PDBTitle: crystal structure analysis of pcna from thermococcus kodakaraensis2 tk0582 Resolution 2.40 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	.	.	.	.	.	.	.	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		S	A	R	E	F	E	S	L	I	A	T	L	E	.	.	.	.	.	.	.	.	.	K	F	F	D	E	A	V	F	Q	V	N	M	E	G	I	Q	M	R	A	I	D	P	S	R	V	V	L	V	D	L	N	L	P	E	M	L	F	S	K	Y	S	V	E	S	E	E	A	I	A	F	D	L	K	R	F	L	K	V
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	T	T		S								S	S									T	T	S										G	G	G	S	S					S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.										.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	.	.	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V
Query Conservation																																																.	.
Alig confidence																																																.	.																												.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		L	K	L	A	R	S	R	D	T	L	V	L	R	K	G	G	E	N	F	L	E	V	G	L	L	G	D	E	N	T	W	F	K	L	P	L	I	D	A	N	T	P	E	I	E	I	P	S	L	P	W	T	V	K	A	V	V	L	A	G	A	L	K	R	A	V	K	A	A	K	L	V	S	D	S	.	.	.	.	I
Template Known Secondary structure			T	T			T	T									S	S	S								S	S	S																																														S		.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.									.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																								.	.	.	.	.	.	.	.																														.																			.	.
Query SS confidence																								.	.	.	.	.	.	.	.																														.																			.	.
Query Sequence		R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	.	.	.	.	.	.	.	.	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	.
Query Conservation																								.	.	.	.	.	.	.	.																														.																			.	.
Alig confidence																	.							.	.	.	.	.	.	.	.																														.									.										.	.
Template Conservation																	.																																																					.
Template Sequence		Y	F	M	A	T	P	E	K	L	T	F	K	A	E	G	.	N	D	S	E	V	R	T	V	L	T	M	E	D	P	G	L	L	D	L	E	H	K	M	T	K	A	K	S	A	Y	G	V	A	Y	L	E	D	I	L	R	S	L	A	D	A	D	E	V	I	I	R	F	.	G	F	D	I	P	L	L	L	K	Y	M
Template Known Secondary structure							S	S									.	S	S									T	T	S	T	T							S	S	S																S	S	S		T	T	S							.		T	T	S
Template Predicted Secondary structure																	.																																																					.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	D	A	G	E	V	S	F	L	I	A	P
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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