Job Description P0A988 Confidence 99.81% Date Thu Jan 5 11:09:37 GMT 2012 Rank 23 Aligned Residues 329 % Identity 17% Template c3k4xA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: eukaryotic sliding clamp pcna bound to dna Resolution 2.98 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	.	.	.	.	.	.	.	.	.	.	.	.	A	L	V	Q	P	H	E	P	G	A	T	T
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		T	L	S	L	P	S	S	E	F	S	K	I	V	R	D	L	S	Q	L	S	.	.	.	.	.	.	.	.	.	D	S	I	N	I	M	I	T	K	E	T	I	K	F	V	A	D	G	D	I	G	S	G	S	V	I	I	K	P	F	V	D	M	E	H	P	E	T	S	I	K	L	E	M	D	Q	P	V	D	L	T
Template Known Secondary structure																			T	T		.	.	.	.	.	.	.	.	.	S								T	T									S	S										B			S	S	S	G	G	G		B					S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.										.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	A	R	K	F	F	D	I	C	R	G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q
Query Conservation
Alig confidence																															.	.	.	.									.																		.														.	.	.	.	.	.	.
Template Conservation																															.	.	.	.									.																		.														.	.	.	.	.	.	.
Template Sequence		F	G	A	K	Y	L	L	D	I	I	K	G	S	S	L	S	D	R	V	G	I	R	L	S	S	E	A	P	A	.	.	.	.	L	F	Q	F	D	L	K	S	.	G	F	L	Q	F	F	L	A	P	K	F	N	L	E	A	K	F	.	E	E	A	S	L	F	K	R	I	I	D	G	F	.	.	.	.	.	.	.
Template Known Secondary structure											G	G	G	G	G	T		S								S	S	S			.	.	.	.							T	T	.																		.	S	S										T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.									.																		.														.	.	.	.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220
Predicted Secondary structure																																										.	.	.	.	.	.	.																														.	.
Query SS confidence																																										.	.	.	.	.	.	.																														.	.
Query Sequence		D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	.	.	.	.	.	.	.	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	.	.	G	S
Query Conservation																																										.	.	.	.	.	.	.																														.	.
Alig confidence		.	.																																							.	.	.	.	.	.	.																								.						.	.
Template Conservation		.	.																																																																					.
Template Sequence		.	.	K	D	C	V	Q	L	V	N	F	Q	C	K	E	D	G	I	I	A	Q	A	V	D	D	S	R	V	L	L	V	S	L	E	I	G	V	E	A	F	Q	E	Y	R	C	D	H	P	V	T	L	G	M	D	L	T	S	L	S	K	I	L	R	C	G	N	N	T	D	T	.	L	T	L	I	A	D	N	T	P
Template Known Secondary structure		.	.	T	T	T		S								T	T									T	T	S	S									G	G	G							S	S																		S		S	S	S		.							S	S
Template Predicted Secondary structure		.	.																																																																					.
Template SS confidence
				554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.		.	.	.	.	.	.	.	.	630
		221	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																						.
Query SS confidence											.	.	.	.	.	.																						.
Query Sequence		N	N	I	R	A	H	V	G	D	.	.	.	.	.	.	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T
Query Conservation											.	.	.	.	.	.																						.
Alig confidence											.	.	.	.	.	.																	.	.				.																											.	.	.	.
Template Conservation																																	.	.																															.	.	.	.
Template Sequence		D	S	I	I	L	L	F	E	D	T	K	K	D	R	I	A	E	Y	S	L	K	L	M	D	I	D	A	D	F	L	K	.	.	I	E	E	L	Q	Y	D	S	T	L	S	L	P	S	S	E	F	S	K	I	V	R	D	L	S	Q	L	S	D	S	.	.	.	.	I	N	I	M	I	T	K	E	T	I	K	F	V
Template Known Secondary structure		S									S	S																					.	.							S																			T	T		S		.	.	.	.							T	T
Template Predicted Secondary structure																																	.	.																															.	.	.	.
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.			.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.					.	.	.	.	.	.	.	.	700	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.												.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Query Sequence		A	N	N	P	E	Q	E	E	A	E	E	I	L	D	.	.	.	.	.	.	.	.	.	.	.	V	T	Y	S	.	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	D	A	A	S	Q	S	A	A	Y
Query Conservation																.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Alig confidence					.											.	.	.	.	.	.	.	.	.	.	.					.																						.											.								.
Template Conservation					.																																																											.
Template Sequence		A	D	G	.	D	I	G	S	G	S	V	I	I	K	P	F	V	D	M	E	H	P	E	T	S	I	K	L	E	M	D	Q	P	V	D	L	T	F	G	A	K	Y	L	L	D	I	I	K	G	S	S	L	S	D	R	V	G	I	R	L	S	S	.	E	A	P	A	L	F	Q	F	D	L	K	S	G	F	L	Q	F
Template Known Secondary structure					.	S	S										B			S	S		G	G	G		B					S	S															G	G	G	G	G	T		S								S	.	S	S									T	T
Template Predicted Secondary structure					.																																																											.
Template SS confidence
		705	.	.		.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.		.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
		360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		783	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions