Job Description P0A988 Confidence 99.96% Date Thu Jan 5 11:09:37 GMT 2012 Rank 16 Aligned Residues 218 % Identity 12% Template c3aizD_ PDB info PDB header:replication Chain: D: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212) Resolution 2.80 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	.	.	.	.	.	.	.	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		D	A	D	A	F	S	Y	I	F	R	T	L	E	.	.	.	.	.	.	.	.	.	E	F	I	D	E	I	T	L	D	F	T	S	D	G	L	K	I	R	G	I	D	P	S	R	V	T	F	I	D	I	L	I	P	A	G	Y	F	E	E	Y	N	V	E	K	E	E	K	V	G	V	K	L	E	D	F	T	D	V
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	T	T		S								S	S									T	T	S										G	G	G	S	S					S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.										20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																					.	.																													.
Query SS confidence																					.	.																													.
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	.	.	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G
Query Conservation																					.	.																													.
Alig confidence											.										.	.																													.																												.	.	.
Template Conservation											.																																																																				.	.	.
Template Sequence		L	K	T	V	T	K	N	D	S	.	L	Y	L	E	T	D	E	N	Q	N	I	K	V	T	L	D	G	V	Y	E	R	T	F	T	F	P	S	I	V	A	S	E	I	E	T	P	N	L	N	L	E	F	P	F	K	A	K	A	L	T	V	T	F	T	D	I	I	D	E	I	E	D	I	G	G	D	S	.	.	.
Template Known Secondary structure			T	T			T	T			.							T	T	S								S	S	S																								S																							S		.	.	.
Template Predicted Secondary structure											.																																																																				.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.
Predicted Secondary structure																															.	.	.	.	.	.																								.																			.	.
Query SS confidence																															.	.	.	.	.	.																								.																			.	.
Query Sequence		V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	.	.	.	.	.	.	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	.	D
Query Conservation																															.	.	.	.	.	.																								.																			.	.
Alig confidence																		.													.	.	.	.	.	.																								.									.										.	.
Template Conservation																		.																																																			.
Template Sequence		I	T	F	K	A	E	G	G	K	L	Y	L	S	A	N	S	.	D	M	G	S	S	T	I	E	L	S	T	E	N	G	G	L	L	E	S	E	G	G	D	A	E	S	V	Y	G	L	E	Y	V	V	N	T	S	K	M	R	K	P	S	D	T	V	E	I	A	F	.	G	S	Q	I	P	L	K	L	R	Y	N	L
Template Known Secondary structure								T	T								S	.	S	S									T	T	T	S	S		S																			G	G	G	G	G	T	T		S							.		T	T
Template Predicted Secondary structure																		.																																																			.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.
		352	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	G	G	Y	A	D	F	Y	I	A	P
Template Known Secondary structure		G	G	G									B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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