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Job DescriptionP0A988
Confidence99.96%DateThu Jan 5 11:09:37 GMT 2012
Rank16Aligned Residues218
% Identity12%Templatec3aizD_
PDB info PDB header:replicationChain: D: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160.........170.........180........ .190.........200...
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Query Sequence  PQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSL. . . . . . . PSHSVIVPRKGVIEL
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Template Sequence  DADAFSYIFRTLE. . . . . . . . . EFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDV
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   7..10......... 20.........30.........40.........50.........60.........70.......
 
   204.....210.........220.. .......230.........240.........250 .........260.........270.........280
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Query Sequence  MRMLDGGDNPLRVQIGSNN. . IRAHVGDFIFTSKLVDGRFPDYRRVLPK. NPDKHLEAGCDLLKQAFARAAILSNEKFRG
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Template Sequence  LKTVTKNDS. LYLETDENQNIKVTLDGVYERTFTFPSIVASEIETPNLNLEFPFKAKALTVTFTDIIDEIEDIGGDS. . .
Template Known Secondary structure  TT

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   78.80...... ...90.........100.........110.........120.........130.........140.........150...
 
   281........290.........300......... 310.........320.........330.. .......340.........350 .
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Query Sequence  VRLYVSENQLKITANNPEQEEAEEILDVT. . . . . . YSGAEMEIGFNVSYVLDVLNALK. CENVRMMLTDSVSSVQIE. . D
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Template Sequence  ITFKAEGGKLYLSANS. DMGSSTIELSTENGGLLESEGGDAESVYGLEYVVNTSKMRKPSDTVEIAF. GSQIPLKLRYNL
Template Known Secondary structure  TT

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   154.....160......... 170.........180.........190.........200.........210......... 220.........230.
 
   352.......360...
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Query Sequence  AASQSAAYVVMP
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Template Sequence  PQGGYADFYIAP
Template Known Secondary structure  GGG
B
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   232.......240...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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