Job Description P0A988 Confidence 99.65% Date Thu Jan 5 11:09:37 GMT 2012 Rank 25 Aligned Residues 219 % Identity 9% Template c3aizB_ PDB info PDB header:replication Chain: B: PDB Molecule:dna polymerase sliding clamp b; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212) Resolution 2.80 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	.	.	.	.	.	.	.	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		S	A	K	D	F	Y	S	L	L	S	G	L	.	.	.	.	.	.	.	.	.	L	K	V	T	D	E	I	I	L	N	F	T	E	D	S	I	F	S	R	Y	L	T	D	D	K	V	L	M	V	I	F	K	I	P	K	E	Y	L	E	D	Y	T	I	D	K	P	L	G	I	K	I	N	I	N	D	L	K	K	I
Template Known Secondary structure												T		.	.	.	.	.	.	.	.	.	T	T			S								S	S									T	T	S	S									G	G	G							S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.										20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																								.
Query SS confidence																										.	.	.	.																								.
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	.	.	.	.	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F
Query Conservation																										.	.	.	.																								.
Alig confidence																										.	.	.	.																								.																											.	.
Template Conservation																																																																																.	.
Template Sequence		L	G	K	A	K	S	K	S	A	T	V	T	L	E	E	T	E	A	G	L	K	V	T	V	R	D	E	K	T	G	T	R	S	N	I	Y	I	K	G	E	K	T	S	I	D	Q	L	T	E	P	K	V	N	L	S	V	T	F	T	T	D	G	D	V	L	K	D	I	A	R	D	L	S	L	V	G	E	E	.	.
Template Known Secondary structure		G	G	G	G	S	S	S								B		S	S									T	T	T																										S																		T	T	S		S		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350
Predicted Secondary structure																									.	.	.	.	.																																.																		.	.
Query SS confidence																									.	.	.	.	.																																.																		.	.
Query Sequence		R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	.	.	.	.	.	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	.	.	E
Query Conservation																									.	.	.	.	.																																.																		.	.
Alig confidence		.	.																						.	.	.	.	.																																.										.								.	.
Template Conservation		.	.																																																																				.
Template Sequence		.	.	V	E	I	S	A	D	E	N	T	V	T	L	S	T	E	E	A	G	R	T	Y	K	S	L	L	K	Q	D	K	P	L	K	S	L	N	V	E	S	P	S	K	A	V	Y	S	I	E	V	L	K	D	V	F	K	V	T	S	I	S	Q	N	V	T	V	G	F	G	.	N	N	I	P	M	K	I	E	V	P
Template Known Secondary structure		.	.							S	S									T	T										T	B			S					S	S																T	T	G	G	G		S	S							.	T	T
Template Predicted Secondary structure		.	.																																																																				.
Template SS confidence
				157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	S	G	G	Q	L	I	F	W	I	A	P
Template Known Secondary structure			T	T	S									B
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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