Job Description P0A988 Confidence 99.97% Date Thu Jan 5 11:09:37 GMT 2012 Rank 12 Aligned Residues 222 % Identity 15% Template c2zvwH_ PDB info PDB header:dna binding protein Chain: H: PDB Molecule:proliferating cell nuclear antigen 2; PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21 Resolution 2.50 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	.	.	.	.	.	.	.	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	S	L	L	K	K	V	L	E	A	V	K	.	.	.	.	.	.	.	.	.	D	L	V	N	D	A	N	F	D	C	S	T	T	G	F	S	L	Q	A	M	D	S	S	H	V	A	L	V	S	L	L	L	R	S	E	G	F	E	H	Y	R	C	D	R	N	L	S	M	G	M	N	L	G	N	M	S	K	M
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	T	T		S								S	S									T	T	S	S									G	G	G	S	S					S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20										.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure												.																	.	.	.	.	.	.																																														.	.
Query SS confidence												.																	.	.	.	.	.	.																																														.	.
Query Sequence		M	R	M	L	D	G	G	D	N	P	.	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	.	.	.	.	.	.	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	.	.
Query Conservation												.																	.	.	.	.	.	.																																														.	.
Alig confidence												.																	.	.	.	.	.	.																	.																													.	.
Template Conservation																																																			.
Template Sequence		L	K	C	A	G	N	D	D	I	I	T	I	K	A	D	D	G	S	D	T	V	T	F	M	F	E	S	P	T	Q	D	K	I	A	D	F	E	M	K	L	M	D	I	D	S	E	H	L	G	.	I	P	D	A	E	Y	H	S	I	V	R	M	P	S	G	E	F	S	R	I	C	K	D	L	S	S	I	G	D	T
Template Known Secondary structure			T	T	S		T	T									S	S		S									T	T	S	S																			.							S																			T	T		S
Template Predicted Secondary structure																																																			.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
							275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																											.
Query SS confidence		.	.	.	.	.																																																											.
Query Sequence		.	.	.	.	.	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q
Query Conservation		.	.	.	.	.																																																											.
Alig confidence		.	.	.	.	.																																																											.									.
Template Conservation																																																																										.
Template Sequence		V	V	I	S	V	T	K	E	G	V	K	F	S	T	A	G	D	I	G	T	A	N	I	V	L	R	Q	N	T	T	V	D	K	P	E	D	A	I	V	I	E	M	N	E	P	V	S	L	S	F	A	L	R	Y	M	N	S	F	T	K	A	T	P	L	S	E	T	V	T	I	S	L	.	S	S	E	L	P	V	V
Template Known Secondary structure								T	T									T	T											S	S			S	G	G	G							S	S															G	G	G	G	G	G		S							.		T	T	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.
		349	350		.	.	.	.	.	.	.	.		.	360	.	.	.
Predicted Secondary structure				.									.
Query SS confidence				.									.
Query Sequence		I	E	.	D	A	A	S	Q	S	A	A	.	Y	V	V	M	P
Query Conservation				.									.
Alig confidence				.									.
Template Conservation
Template Sequence		V	E	Y	K	V	A	E	M	G	Y	I	R	Y	Y	L	A	P
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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