Job Description P0A988 Confidence 99.93% Date Thu Jan 5 11:09:37 GMT 2012 Rank 22 Aligned Residues 223 % Identity 14% Template c2od8A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: structure of a peptide derived from cdc9 bound to pcna Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	.	.	.	.	.	.	.	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		E	A	S	L	F	K	R	I	I	D	G	F	K	.	.	.	.	.	.	.	.	.	D	C	V	Q	L	V	N	F	Q	C	K	E	D	G	I	I	A	Q	A	V	D	D	S	R	V	L	L	V	S	L	E	I	G	V	E	A	F	Q	E	Y	R	C	D	H	P	V	T	L	G	M	D	L	T	S	L	S	K	I
Template Known Secondary structure												T	T	T	.	.	.	.	.	.	.	.	.	T	T		S								S	S									T	T	S										G	G	G							S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20										.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure												.															.	.	.	.	.																																																		.
Query SS confidence												.															.	.	.	.	.																																																		.
Query Sequence		M	R	M	L	D	G	G	D	N	P	.	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	.	.	.	.	.	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	.
Query Conservation												.															.	.	.	.	.																																																		.
Alig confidence												.															.	.	.	.	.																																																		.
Template Conservation
Template Sequence		L	R	C	G	N	N	T	D	T	L	T	L	I	A	D	N	T	P	D	S	I	I	L	L	F	E	D	T	K	K	D	R	I	A	E	Y	S	L	K	L	M	D	I	D	A	D	F	L	K	I	E	E	L	Q	Y	D	S	T	L	S	L	P	S	S	E	F	S	K	I	V	R	D	L	S	Q	L	S	D	S	I
Template Known Secondary structure			T				S	S									S	S		S									S	S	S	S																									S																		T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
								277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																									.
Query SS confidence		.	.	.	.	.	.																																																									.
Query Sequence		.	.	.	.	.	.	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I
Query Conservation		.	.	.	.	.	.																																																									.
Alig confidence		.	.	.	.	.	.																																																									.									.
Template Conservation																																																																									.
Template Sequence		N	I	M	I	T	K	E	T	I	K	F	V	A	D	G	D	I	G	S	G	S	V	I	I	K	P	F	V	D	M	E	H	P	E	T	S	I	K	L	E	M	D	Q	P	V	D	L	T	F	G	A	K	Y	L	L	D	I	I	K	G	S	S	L	S	D	R	V	G	I	R	L	.	S	S	E	A	P	A	L	F
Template Known Secondary structure							T	T									S	S										B			T	T		G	G	G		B					S	S															G	G	G	G	G	T		S							.		T	T	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.
		350		.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		E	.	D	A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		Q	F	D	L	K	S	G	F	L	Q	F	F	L	A	P
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions