Job Description P0A988 Confidence 99.05% Date Thu Jan 5 11:09:37 GMT 2012 Rank 28 Aligned Residues 204 % Identity 12% Template c2ix2A_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase sliding clamp b; PDBTitle: crystal structure of the heterotrimeric pcna from2 sulfolobus solfataricus Resolution 2.2 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	.	.	.	.	.	.	.	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																													.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		N	A	K	D	F	F	S	F	I	N	S	I	.	.	.	.	.	.	.	.	.	T	N	V	T	D	S	I	I	L	N	F	T	E	D	G	I	F	S	R	H	L	T	E	D	K	V	L	M	A	I	M	R	I	P	K	D	V	L	S	E	Y	S	I	D	S	P	T	S	V	K	L	D	V	S	S	V	K	K	I
Template Known Secondary structure													T	.	.	.	.	.	.	.	.	.		S	S		S								T	T									T	T	S										G	G	G	S	S					S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.										20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	.	.	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V
Query Conservation																										.	.
Alig confidence								.	.																	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation								.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		L	S	K	A	S	K	.	.	A	T	I	E	L	T	D	S	G	L	K	I	I	I	R	D	E	K	S	G	A	K	S	T	I	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	L	A	V	N	F	T	T	D	E	S	V	L	N	V	I	A	A	D	V	T	L	V	G	E	E	.	.	.	.	M
Template Known Secondary structure								.	.									S								T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.				S																						S		.	.	.	.
Template Predicted Secondary structure								.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		79	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.														.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.
Predicted Secondary structure																																.																						.	.																		.	.
Query SS confidence																																.																						.	.																		.	.
Query Sequence		R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	.	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	.	.	E	D	A	A	S	Q	S
Query Conservation																																.																						.	.																		.	.
Alig confidence																																.																						.	.									.									.	.
Template Conservation																																																																.
Template Sequence		R	I	S	T	E	E	D	K	I	K	I	E	A	G	R	Y	V	A	F	L	M	K	D	K	P	L	K	E	L	S	I	D	T	S	A	S	S	S	Y	S	A	E	M	F	K	D	A	V	K	G	L	R	G	F	S	A	P	T	M	V	S	F	.	G	E	N	L	P	M	K	I	D	V	E	A	V	S	G	G	H
Template Known Secondary structure							T	T																T	B			S					S	S																	T	T	T	T			S							.		T	T										T	T	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		357	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	F	W	I	A	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions