Job Description P0A988 Confidence 100.00% Date Thu Jan 5 11:09:37 GMT 2012 Rank 3 Aligned Residues 364 % Identity 22% Template c2awaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta chain; PDBTitle: crystal structure of dna polymerase iii, beta chain (ec 2.7.7.7)2 (np_344555.1) from streptococcus pneumoniae tigr4 at 2.50 a3 resolution Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.								.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V	Q	.	.	.	.	.	.	.	P	H	E	P	G	A	T	T	V	P	A	R
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																																																												.			.	.	.	.	.	.	.
Template Conservation																																																												.
Template Sequence		I	H	F	S	I	N	K	N	L	F	L	Q	A	L	N	T	T	K	R	A	I	S	S	K	N	A	I	P	I	L	S	T	V	K	I	D	V	T	N	E	G	I	T	L	I	G	S	N	G	Q	I	S	I	E	N	F	I	S	.	Q	K	N	E	D	A	G	L	L	I	T	S	L	G	S	I	L	L	E	A	S
Template Known Secondary structure																				T	T			S	S		S	S	G	G	G	G								S	S									S	S									.	T	T		G	G	G	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	F	D	I	C	R	G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	I	N	V	V	S	S	L	P	D	V	T	L	D	F	K	E	I	E	Q	N	Q	I	V	L	T	S	G	K	S	E	I	T	L	K	G	K	D	S	E	Q	Y	P	R	I	Q	E	I	S	A	S	T	P	L	I	L	E	T	K	L	L	K	K	I	I	N	E	T	A	F	A	A	S	T	Q	E	S	R	P
Template Known Secondary structure												S	S								T	T	T							T	T								B		G	G	G	S								S																			G	G	G	S				T	T	S	G
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		154	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Y	L	N	G	M	L	F	E	T	E	.	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		I	L	T	G	V	H	F	V	L	S	Q	H	K	E	L	K	T	V	A	T	D	S	H	R	L	S	Q	K	K	L	T	L	E	K	N	S	D	D	F	D	V	V	I	P	S	R	S	L	R	E	F	S	A	V	F	T	D	D	I	E	T	V	E	I	F	F	A	N	N	Q	I	L	F	R	S	E	N	I	S	F
Template Known Secondary structure		G	G	G								T	T	T									S	S										S	S																					S		T	T										S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310
Predicted Secondary structure																																																		.																													.
Query SS confidence																																																		.																													.
Query Sequence		T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	.	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	.	T	Y
Query Conservation																																																		.																													.
Alig confidence																																																		.																													.
Template Conservation
Template Sequence		Y	T	R	L	L	E	G	N	Y	P	D	T	D	R	L	I	P	T	D	F	N	T	T	I	T	F	N	V	V	N	L	R	Q	S	X	E	R	A	R	L	L	S	S	A	T	Q	N	G	T	V	K	L	E	I	K	D	G	V	V	S	A	H	V	H	S	P	E	V	G	K	V	N	E	E	I	D	T	D	Q	V
Template Known Secondary structure								S						G	G	G						S																						T	T	S	S	S									T	T									T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	D	.	A	A	S	Q	S	A	A	Y	V	V	M	P	M	R
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		T	G	E	D	L	T	I	S	F	N	P	T	Y	L	I	D	S	L	K	A	L	N	S	E	K	V	T	I	S	F	I	S	A	V	R	P	F	T	L	V	P	A	D	T	D	E	D	F	X	Q	L	I	T	P	V	R
Template Known Secondary structure																					T			S	S									S	S	S							S	S		S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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