Job Description P0A988 Confidence 100.00% Date Thu Jan 5 11:09:37 GMT 2012 Rank 2 Aligned Residues 364 % Identity 27% Template c1vpkA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of dna polymerase iii, beta subunit (tm0262) from2 thermotoga maritima at 2.00 a resolution Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V	Q	P	H	E	P	G	A	T	T	V	P	A	R	K	F	F	D	I	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	V	T	V	T	T	L	E	L	K	D	K	I	T	I	A	S	K	A	L	A	K	K	S	V	K	P	I	L	A	G	F	L	F	E	V	K	D	G	N	F	Y	I	C	A	T	D	L	E	T	G	V	K	A	T	V	N	A	A	E	I	S	G	E	A	R	F	V	V	P	G	D	V	I	Q	K	M	V	K
Template Known Secondary structure																			G	G	G				S	S	S		G	G	G	G								T	T									S	S										S																				T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		V	L	P	D	E	.	I	T	E	L	S	L	E	G	D	A	L	V	I	S	S	G	S	T	V	F	R	I	T	T	M	P	A	D	E	F	P	E	I	T	P	A	E	S	G	I	T	F	E	V	D	T	S	L	L	E	E	M	V	E	K	V	I	F	A	A	A	K	D	E	F	M	R	N	L	N	G	V	F	W
Template Known Secondary structure		T			S	S	.								T	T							T	T								B			T	T	S								S	S																		G	G	G	S				T	T		T	T	T	S
Template Predicted Secondary structure							.
Template SS confidence
		81	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	.	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G
Query Conservation																																																	.
Alig confidence																													.																				.
Template Conservation																													.
Template Sequence		E	L	H	K	N	L	L	R	L	V	A	S	D	G	F	R	L	A	L	A	E	E	Q	I	E	N	E	.	E	E	A	S	F	L	L	S	L	K	S	M	K	E	V	Q	N	V	L	D	N	T	T	E	P	T	I	T	V	R	Y	D	G	R	R	V	S	L	S	T	N	D	V	E	T	V	M	R	V	V	D	A
Template Known Secondary structure					T	T									S	S													.	S																				T				S								S	S							S	S									S	S
Template Predicted Secondary structure																													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	P	D	Y	K	R	V	I	P	E	T	F	K	T	K	V	V	V	S	R	K	E	L	R	E	S	L	K	R	V	M	V	I	A	S	K	G	S	E	S	V	K	F	E	I	E	E	N	V	M	R	L	V	S	K	S	P	D	Y	G	E	V	V	D	E	V	E	V	Q	K	E	G	E	D	L	V	I	A	F
Template Known Secondary structure						G	G	G	G	S		S			S																						T	T	T	T									S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	D	A	A	S	Q	S	A	A	Y	V	V	M	P	M	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	K	F	I	E	D	V	L	K	H	I	E	T	E	E	I	E	M	N	F	V	D	S	T	S	P	C	Q	I	N	P	L	D	I	S	G	Y	L	Y	I	V	M	P	I	R	L
Template Known Secondary structure															S	S							S		T	T	S							T	T			S								B
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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