Job Description P0A988 Confidence 99.80% Date Thu Jan 5 11:09:37 GMT 2012 Rank 24 Aligned Residues 210 % Identity 16% Template c1ud9C_ PDB info PDB header:dna binding protein Chain: C: PDB Molecule:dna polymerase sliding clamp a; PDBTitle: crystal structure of proliferating cell nuclear antigen (pcna) homolog2 from sulfolobus tokodaii Resolution 1.68 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	L	.	.	.	.	.	.	.	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		D	V	R	D	L	K	A	I	I	Q	A	L	.	.	.	.	.	.	.	.	.	L	K	L	V	D	E	A	L	F	D	I	K	P	E	G	I	Q	L	V	A	I	D	K	A	H	I	S	L	I	K	I	E	L	P	K	E	M	F	K	E	Y	D	V	P	E	E	F	K	F	G	F	N	T	Q	Y	M	S	K	L
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	T	T	T		S								T	T									T	T	S	S									G	G	G	S	S					S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.										.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																								.
Query SS confidence																										.	.	.	.																								.
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	.	.	.	.	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F
Query Conservation																										.	.	.	.																								.
Alig confidence											.															.	.	.	.												.	.	.	.	.	.	.	.					.																											.	.
Template Conservation											.																														.	.	.	.	.	.	.	.																																.	.
Template Sequence		L	K	A	A	K	R	K	E	E	.	I	I	I	D	A	D	S	P	E	V	V	K	L	T	L	S	G	A	L	N	R	V	F	N	V	N	N	I	E	.	.	.	.	.	.	.	.	V	L	P	P	L	E	F	D	I	K	A	T	I	N	A	S	G	L	K	N	A	I	G	E	I	A	E	V	A	D	T	.	.
Template Known Secondary structure		T	T	T			S				.								T	T							G	G	G	T	T										.	.	.	.	.	.	.	.								S																						S		.	.
Template Predicted Secondary structure											.																														.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350
Predicted Secondary structure																											.	.	.	.	.																														.																		.	.
Query SS confidence																											.	.	.	.	.																														.																		.	.
Query Sequence		R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	.	.	.	.	.	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	.	.	E
Query Conservation																											.	.	.	.	.																														.																		.	.
Alig confidence		.	.																								.	.	.	.	.																														.									.									.	.
Template Conservation		.	.																																																																			.
Template Sequence		.	.	L	L	I	S	G	N	E	E	K	V	V	V	K	G	E	G	E	N	K	V	E	V	E	F	S	K	D	T	G	S	L	A	D	I	E	F	N	K	E	S	S	S	A	Y	D	V	E	Y	L	N	D	I	I	S	L	T	K	L	S	D	Y	V	K	V	A	F	.	A	D	Q	K	P	M	Q	L	E	F	N
Template Known Secondary structure		.	.							S	S							S	S	S	S								T	T	T	T								S	S														T	G	G	G	G	G	G		S							.		T	T	S
Template Predicted Secondary structure		.	.																																																																			.
Template SS confidence
				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	G	G	G	K	V	T	Y	L	L	A	P
Template Known Secondary structure			G	G	G
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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