Job Description P0A988 Confidence 99.44% Date Thu Jan 5 11:09:37 GMT 2012 Rank 27 Aligned Residues 197 % Identity 16% Template c1sxjF_ PDB info PDB header:replication Chain: F: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	.	.	.	.	.	.	.	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	.	.	.	.	I	R	A	H
Query Conservation																																.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence																																.	.	.	.	.	.	.																										.										.	.	.	.
Template Conservation																																																																.
Template Sequence		V	N	F	Q	C	K	E	D	G	I	I	A	Q	A	V	D	D	S	R	V	L	L	V	S	L	E	I	G	V	E	A	F	Q	E	Y	R	C	D	H	P	V	T	L	G	X	D	L	T	S	L	S	K	I	L	R	C	G	N	N	T	D	T	.	L	T	L	I	A	D	N	T	P	D	S	I	I	L	L	F	E
Template Known Secondary structure								S	S									T	T	S	S									G	G	G							S	S															T	T	S			T	T			.							S	S		S
Template Predicted Secondary structure																																																																.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		227	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure					.	.	.	.																						.
Query SS confidence					.	.	.	.																						.
Query Sequence		V	G	D	.	.	.	.	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E
Query Conservation					.	.	.	.																						.
Alig confidence					.	.	.	.																	.	.				.																											.	.	.	.																	.
Template Conservation																									.	.																															.	.	.	.																	.
Template Sequence		D	T	K	K	D	R	I	A	E	Y	S	L	K	L	X	D	I	D	A	D	F	L	K	.	.	I	E	E	L	Q	Y	D	S	T	L	S	L	P	S	S	E	F	S	K	I	V	R	D	L	S	Q	L	S	D	S	.	.	.	.	I	N	I	X	I	T	K	E	T	I	K	F	V	A	D	G	.	D	I	G	S
Template Known Secondary structure			S	S	S														S						.	.							S																			T	T		S		.	.	.	.							T	T									.	S	S
Template Predicted Secondary structure																									.	.																															.	.	.	.																	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.
		302	.	.	.	.	.												.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Query Sequence		A	E	E	I	L	D	.	.	.	.	.	.	.	.	.	.	.	V	T	Y	S	.	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	D	A	A	S	Q	S	A	A	Y	V	V	M	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.					.																						.																			.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.					.																						.									.										.
Template Conservation																																																						.
Template Sequence		G	S	V	I	I	K	P	F	V	D	X	E	H	P	E	T	S	I	K	L	E	X	D	Q	P	V	D	L	T	F	G	A	K	Y	L	L	D	I	I	K	G	S	S	L	S	D	R	V	G	I	R	L	.	S	S	E	A	P	A	L	F	Q	F	D	L	K	S	G	F	L	Q	F	F	L	A	P
Template Known Secondary structure												T	T											S	S															T	T	G	G	G	T		S							.		T	T	S									T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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