Job Description P0A988 Confidence 99.96% Date Thu Jan 5 11:09:37 GMT 2012 Rank 17 Aligned Residues 212 % Identity 18% Template c1ge8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:proliferation cell nuclear antigen; PDBTitle: proliferating cell nuclear antigen (pcna) homolog from2 pyrococcus furiosus Resolution 2.10 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C	S	M	P	I	G	Q	S	.	.	.	.	.	.	.	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		G	A	K	E	F	A	Q	L	I	D	T	A	S	.	.	.	.	.	.	.	.	.	K	L	I	D	E	A	A	F	K	V	T	E	D	G	I	S	M	R	A	M	D	P	S	R	V	V	L	I	D	L	N	L	P	S	S	I	F	S	K	Y	E	V	V	E	P	E	T	I	G	V	N	L	D	H	L	K	K	I
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	T	T		S								S	S									T	T	S										G	G	G	S	S					S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.										.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.																											.	.	.	.
Template Conservation																																											.	.	.	.	.	.																											.	.	.	.
Template Sequence		L	K	R	G	K	A	K	D	T	L	I	L	K	K	G	E	E	N	F	L	E	I	T	I	Q	G	T	A	T	R	T	F	R	V	P	L	I	D	P	E	L	.	.	.	.	.	.	P	F	T	A	K	V	V	V	L	G	E	V	L	K	D	A	V	K	D	A	S	L	V	S	D	S	.	.	.	.	I	K	F
Template Known Secondary structure			T	T			T	T									S	S	S								S	S	S									B					.	.	.	.	.	.																						T	T		S		.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																						.																			.
Query SS confidence																														.	.	.	.	.	.	.																						.																			.
Query Sequence		Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	E	A	E	E	I	L	D	V	T	Y	S	.	.	.	.	.	.	.	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	.	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	.	D	A	A	S
Query Conservation																														.	.	.	.	.	.	.																						.																			.
Alig confidence															.															.	.	.	.	.	.	.																						.									.										.
Template Conservation															.																																																				.
Template Sequence		I	A	R	E	N	E	F	I	M	K	A	E	G	.	E	T	Q	E	V	E	I	K	L	T	L	E	D	E	G	L	L	D	I	E	V	Q	E	E	T	K	S	A	Y	G	V	S	Y	L	S	D	M	V	K	G	L	G	K	A	D	E	V	T	I	K	F	.	G	N	E	M	P	M	Q	M	E	Y	Y	I	R	D
Template Known Secondary structure					T	T									.	S	S									T	T	S	S	S							S	S															T	T	T			S	S								.		T	T	S									T	T
Template Predicted Secondary structure															.																																																				.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.
		355	.	.	.		.	360	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	S	A	A	.	Y	V	V	M	P
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		E	G	R	L	T	F	L	L	A	P
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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