Job Description P0A988 Confidence 4.90% Date Thu Jan 5 11:09:37 GMT 2012 Rank 70 Aligned Residues 127 % Identity 12% Template c1dmlG_ PDB info PDB header:dna binding protein/transferase Chain: G: PDB Molecule:dna polymerase processivity factor; PDBTitle: crystal structure of herpes simplex ul42 bound to the c-2 terminus of hsv pol Resolution 2.70 Å

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		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.
Predicted Secondary structure																		.																					.	.	.	.	.	.	.																															.	.	.	.
Query SS confidence																		.																					.	.	.	.	.	.	.																															.	.	.	.
Query Sequence		K	L	V	D	G	R	F	P	D	Y	R	R	V	L	P	K	.	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	.	.	.	.	.	.	.	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E	.	.	.	.	E	A
Query Conservation																		.																					.	.	.	.	.	.	.																															.	.	.	.
Alig confidence																		.																					.	.	.	.	.	.	.																															.	.	.	.
Template Conservation
Template Sequence		T	L	M	K	R	E	L	T	S	F	V	V	L	V	P	Q	G	T	P	D	V	Q	L	R	L	T	R	P	Q	L	T	K	V	L	N	A	T	G	A	D	S	A	T	P	T	T	F	E	L	G	V	N	G	K	F	S	V	F	T	T	S	T	C	V	T	F	A	A	R	E	E	G	V	S	S	S	T	S	T	N
Template Known Secondary structure									S	S								S			S																T	S			S	S	S	S								G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	.	D	S	V	S	S	V	Q	I	E	D	A	A	S	Q	S	A	A	Y	V	V
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		A	K	T	V	Y	G	E	N	T	H	R	T	F	S	V	V	V	D	D	C	S	M	R	A	V	L	R	R	L	Q	V	G	G	G	T	L	K	F	F	L	T	T	P	V	P	S	L	C	V	T	A	T	G	P	N	A	V	S	A	V
Template Known Secondary structure		T	T						S	T	T	S								S										T	T											S	S	S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions