Job Description P0A988 Confidence 96.84% Date Thu Jan 5 11:09:37 GMT 2012 Rank 39 Aligned Residues 206 % Identity 9% Template c1b8hA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase processivity component; PDBTitle: sliding clamp, dna polymerase Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V	Q	P	H	E	P	G	A	T	T	V	P	A	R	K	F	F	D	I	C	R
Query Conservation
Alig confidence						.	.	.																						.	.	.	.	.	.	.	.	.	.																					.							.
Template Conservation						.	.	.																						.	.	.	.	.	.	.	.	.	.																					.							.
Template Sequence		M	K	L	S	.	.	.	K	D	T	I	A	I	L	K	N	F	A	S	I	N	S	G	I	L	L	S	Q	.	.	.	.	.	.	.	.	.	.	G	K	F	I	M	T	R	A	V	N	G	T	T	Y	A	E	A	N	I	S	.	D	E	I	D	F	D	.	V	A	L	Y	D	L	N	S	F	L	S	I	L	S
Template Known Secondary structure						.	.	.															S						S	.	.	.	.	.	.	.	.	.	.									T	T	S	S									.					S		.				S										T
Template Predicted Secondary structure						.	.	.																						.	.	.	.	.	.	.	.	.	.																					.							.
Template SS confidence
		1	.	.	.				.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																					.	.			.	.
Query SS confidence																																					.	.			.	.
Query Sequence		G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	.	.	F	P	.	.	N	L	D	D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N
Query Conservation																																					.	.			.	.
Alig confidence																.																					.	.			.	.																				.														.	.	.	.	.	.
Template Conservation																.																																														.														.	.	.	.	.	.
Template Sequence		L	V	S	D	D	A	E	I	S	M	H	T	D	G	.	N	I	K	I	A	D	T	R	S	T	V	Y	W	P	A	A	D	K	S	T	I	V	F	P	N	K	P	I	Q	F	P	V	A	S	V	I	T	E	I	K	A	E	D	L	Q	.	Q	L	L	R	V	S	R	G	L	Q	I	D	T	.	.	.	.	.	.
Template Known Secondary structure		T	S		S	S							T	T	S	.	S						S	S										G	G	G	S				S	S								S												.									T	T				.	.	.	.	.	.
Template Predicted Secondary structure																.																																														.														.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																																																.	.
Query SS confidence																					.	.	.	.	.	.	.	.																																																.	.
Query Sequence		G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	.	.	.	.	.	.	.	.	R	L	A	V	C	S	M	P	I	G	Q	S	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	.	.	I	R	A	H
Query Conservation																					.	.	.	.	.	.	.	.																																																.	.
Alig confidence		.																			.	.	.	.	.	.	.	.														.															.	.	.	.	.															.	.
Template Conservation		.																																								.															.	.	.	.	.
Template Sequence		.	I	A	I	T	N	K	D	G	K	I	V	I	N	G	Y	N	K	V	E	D	S	G	L	T	R	P	K	Y	S	L	T	L	T	D	Y	D	G	S	N	.	N	F	N	F	V	I	N	M	A	N	M	K	I	Q	.	.	.	.	.	P	G	N	Y	K	V	M	L	W	G	A	G	D	K	V	A	A	K	F	E
Template Known Secondary structure		.							S	S									T	T	T		T	T			S		S											S		.								G	G	G					.	.	.	.	.	S	S										T	T
Template Predicted Secondary structure		.																																								.															.	.	.	.	.
Template SS confidence
			138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		227	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	F	I	F	T	S	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	Q	V	S	Y	V	I	A	M
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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