Job Description P0A7W1 Confidence 100.00% Date Thu Jan 5 11:06:20 GMT 2012 Rank 6 Aligned Residues 139 % Identity 29% Template c2zkqe_ PDB info PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.
Query Sequence		L	Q	E	K	L	I	A	V	N	R	V	S	K	T	V	K	G	G	R	I	F	S	F	T	A	L	T	V	V	G	D	G	N	G	R	V	G	F	G	Y	G	K	A	R	E	V	P	A	A	I	Q	K	A	M	E	K	A	R	R	N	M	I	N	V	A	L	.	.	.	.	.	.	.	N	N	G	T	L	Q	H
Query Conservation																																																																				.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	D	E	V	L	K	I	V	P	V	Q	K	Q	T	R	A	G	Q	R	T	R	F	K	A	F	V	A	I	G	D	H	N	G	H	V	G	L	G	V	K	C	S	K	E	V	A	T	A	I	R	G	A	I	I	L	A	K	L	S	I	V	P	V	R	G	Y	W	G	N	K	I	G	K	P	H	T	V	P	C
Template Known Secondary structure															B		S	S		B													S	S	S										S	S															S						B			S	S	S			B		S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		P	V	K	G	V	H	T	G	S	R	V	F	M	Q	P	A	S	E	G	T	G	I	I	A	G	G	A	M	R	A	V	L	E	V	A	G	V	H	N	V	L	A	K	A	Y	G	S	T	N	P	I	.	N	V	V	R	A	T	I	D	G	L	E	N	M	N	S
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		K	V	T	G	R	S	G	S	V	P	V	R	L	I	P	A	P	R	G	T	G	I	V	S	A	P	V	P	K	K	L	L	M	M	A	G	I	D	D	C	Y	T	S	A	R	G	C	T	A	T	L	G	N	F	A	K	A	T	F	D	A	I	S	K	T	Y	S
Template Known Secondary structure								T	T										T	T							T	T									T										S	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions