Job Description P0A7W1 Confidence 100.00% Date Thu Jan 5 11:06:20 GMT 2012 Rank 4 Aligned Residues 165 % Identity 29% Template c2xzmE_ PDB info PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Resolution 3.93 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	H	I	E	K	Q	A	G	E	L	Q	E	K	L	I	A	V	N	R	V	S	K	T	V	K	G	G	R	I	F	S	F	T	A	L	T	V	V	G	D	G	N	G	R	V	G	F	G	Y	G	K	A	R	E	V	P	A	A	I	Q	K	A	M	E	K	A	R	R	N	M	I	N	V	A	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		N	K	D	V	Q	A	E	H	K	L	M	E	E	V	L	Q	I	T	P	V	Q	K	Q	T	Q	A	G	Q	R	T	R	F	K	G	F	V	V	V	G	D	S	N	G	H	I	G	L	G	W	K	V	A	K	E	V	Q	G	A	I	K	G	A	I	T	H	A	K	L	N	M	V	P	V	R	K	G	Y	W	G	N
Template Known Secondary structure		T			S			T	T																	T	T															T	T	T										S	S															T							B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
					77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.
Predicted Secondary structure		.	.	.																																																								.															.	.	.
Query SS confidence		.	.	.																																																								.															.	.	.
Query Sequence		.	.	.	N	N	G	T	L	Q	H	P	V	K	G	V	H	T	G	S	R	V	F	M	Q	P	A	S	E	G	T	G	I	I	A	G	G	A	M	R	A	V	L	E	V	A	G	V	H	N	V	L	A	K	A	Y	G	S	T	.	N	P	I	N	V	V	R	A	T	I	D	G	L	E	.	.	.	N	M	N	S
Query Conservation		.	.	.																																																								.															.	.	.
Alig confidence		.	.	.																																																								.															.	.	.
Template Conservation
Template Sequence		K	I	A	N	A	H	T	I	P	Q	K	I	T	G	K	S	G	S	V	R	I	R	L	V	P	A	P	R	G	T	G	I	V	A	A	P	I	P	K	K	V	L	Q	F	A	G	V	Q	D	I	Y	T	S	S	Q	G	C	T	R	T	R	G	N	F	L	K	A	T	Y	Y	A	L	A	N	T	Y	R	Y	L	T
Template Known Secondary structure				S	S			B		S	S							T	T										S	S				B	S										T	T	T										S			S																			S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		P	E	M	V	A	A	K	R	G	.	.	K	S	V	E	E	I	L	G
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		P	D	F	W	G	K	P	E	D	N	E	L	P	F	E	T	F	S	E
Template Known Secondary structure		T	T	T		S													T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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