Job Description P28905 Confidence 12.68% Date Thu Jan 5 11:45:19 GMT 2012 Rank 85 Aligned Residues 116 % Identity 14% Template c2hjvB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbpa; PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	L	L	D	N	D	T	T	V	D	G	L	S	A	V	E	Q	L	V	C	E	I	A	A	E	R	W	R	S	G	K	R	V	L	I	A	C	E	D	E	K	Q	A	Y	R	L	D	E	A	L	W	A	R	P	A	E	S	F	V	P	H	N	L	A	G	E	G	P	.	.	.	.	.	.	.	.	.	R	G
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.														.	.																																										.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.														.	.
Template Sequence		A	V	I	Q	V	R	E	.	.	.	.	.	.	E	N	K	F	S	L	L	K	D	V	L	M	T	.	.	E	N	P	D	S	C	I	I	F	C	R	T	K	E	H	V	N	Q	L	T	D	E	L	D	D	L	G	Y	P	C	D	K	I	H	G	G	M	I	Q	E	D	R	F	D	V	M	N	E	F	K	R	G
Template Known Secondary structure								G	.	.	.	.	.	.	G	G												.	.				S	S						S	S														T	T								T	T	S															T
Template Predicted Secondary structure									.	.	.	.	.	.														.	.
Template SS confidence
		218	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.														.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure													.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	P	V	E	I	A	W	P	Q	K	.	.	.	R	S	S	S	R	R	D	I	L	I	S	L	R	T	S	F	A	D	F	A	T	A	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	V	D	F	V	P	Y	E	D	S	L	K	Q	L	A	R	E	R	Y
Query Conservation													.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.
Template Sequence		E	Y	R	Y	L	V	A	T	D	V	A	A	R	G	I	D	I	E	N	I	S	L	V	I	N	Y	D	.	.	L	P	L	E	K	E	S	Y	V	H	R	T	G	R	T	G	R	A	G	N	K	G	K	A	I	S	F	V	T	A	F	E	K	R	F	L	A	D	I	E	E	Y
Template Known Secondary structure		S		S						T	T	T	T	T	T	S					B	S					S	S	.	.			S	S									T	T	B		B	T	T	B										T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions