 |
Job Description | P28905 | Confidence | 21.55% | Date | Thu Jan 5 11:45:19 GMT 2012 |
Rank | 57 | Aligned Residues | 120 |
% Identity | 13% | Template | c1gl9B_ |
PDB info |
PDB header:topoisomerase | Chain: B: PDB Molecule:reverse gyrase; |
PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp
|
Resolution | 3.2 Å |
|
 |
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | V | C | E | I | A | A | E | R | W | R | S | G | K | R | V | L | I | A | C | E | D | E | K | Q | A | Y | R | L | D | E | A | L | W | A | R | P | A | E | S | F | V | P | H | N | L | A | G | E | G | P | R | G | G | A | P | V | E | I | A | W | P | Q | K | R | S | S | S | R | R | D | I | L | I | S | L | R | T | S |
Query Conservation |   |
  |   |   |
|
|
|   |   |
|
|   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|
Template Sequence |   |
S | F | G | L | A | M | S | L | F | L | A | L | K | G | K | R | C | Y | V | I | F | P | T | S | L | L | V | I | Q | A | A | E | T | I | R | K | Y | A | E | K | A | G | V | G | T | E | N | L | I | G | Y | Y | H | G | R | I | P | K | R | E | K | E | N | F | M | Q | N | L | R | N | F | K | I | V | I | T | T | T | Q | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
|
| T | T | T |  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  | T | T | T | T | S |
| S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | |
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|  |  | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | A | D | F | A | T | A | F | T | E | V | . |
V | D | F | V | P | Y | E | D | S | L | K | Q | L | A | R | E | R | Y | K | A | Y | R | V | A | G | F | N | L | N |
Query Conservation |   |
  |
|   |   |   |   |   |
|   |
|
| . |
|
|   |
|   |   |
|   |   |   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
Template Sequence |   |
L | S | K | H | Y | R | E | L | G | H | F | D | F | I | F | V | D | D | V | D | A | I | L | K | A | S | K | N | V | D | K | L | L | H | L | L | G | F | H | Y | D |
Template Known Secondary structure |   |
 |  |  |  | S | S | S | S |
|
|
| S |  |  |  |  | S |
| S |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
| B |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|