Job Description P0A9D2 Confidence 100.00% Date Thu Jan 5 11:09:55 GMT 2012 Rank 36 Aligned Residues 189 % Identity 23% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

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		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	K	L	F	Y	K	P	.	G	A	C	S	L	A	S	H	I	T	L	R	E	S	G	K	D	F	T	L	V	S	V	D	L	M	K	K	R	L	E	N	G	D	D	Y	F	A	V	N	P	K	G	Q	V	P	A	L	L	L	D	D	G	T	L	L	T	E	G	V	A	I	M	Q	Y	L	A	D	S	V	P	D
Query Conservation									.
Alig confidence									.																												.	.	.	.																					.
Template Conservation																																					.	.	.	.																					.
Template Sequence		M	T	L	F	S	G	P	T	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	V	E	I	E	Q	V	E	A	D	N	.	.	.	.	L	P	Q	D	L	I	D	L	N	P	Y	R	T	V	P	T	L	V	D	R	.	E	L	T	L	Y	E	S	R	I	I	M	E	Y	L	D	E	R	F	P	H
Template Known Secondary structure								T	T															T										T	T	S	.	.	.	.										T	T			S	S					T	.	T					S														S
Template Predicted Secondary structure																																					.	.	.	.																					.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	L	A	P	V	N	S	I	S	R	Y	K	T	I	E	W	L	N	Y	I	A	T	E	L	H	K	G	F	T	P	L	F	R	P	D	T	P	E	E	Y	K	P	T	V	R	A	Q	L	E	K	K	L	Q	Y	V	N	E	A	L	K	D	E	H	W	I	C	G	Q	R	F	T	I	A	D	A	Y	L	F
Query Conservation
Alig confidence						.																													.	.
Template Conservation						.																													.	.
Template Sequence		P	P	L	M	.	P	V	Y	P	V	A	R	G	S	S	R	L	M	M	H	R	I	E	H	D	W	Y	S	L	L	Y	K	I	.	.	E	Q	G	N	A	Q	E	A	E	A	A	R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P	F	F	M	S	E	E	F	S	L	V	D	C	Y	L	A
Template Known Secondary structure		S			S	.		S	S																		T								.	.			S																			T	T	T						S	B	T	T	B	S	S
Template Predicted Secondary structure						.																													.	.
Template SS confidence
		86	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		T	V	L	R	W	A	Y	A	V	K	L	N	.	.	L	E	G	L	E	H	I	A	A	F	M	Q	R	M	A	E	R	P	E	V	Q	D	A	L	S	A
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		P	L	L	W	R	L	P	V	L	G	I	E	F	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L	T	E
Template Known Secondary structure						T	G	G	G	G	T					S	T	T													T	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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