Job Description P0A9U1 Confidence 97.38% Date Thu Jan 5 11:11:22 GMT 2012 Rank 143 Aligned Residues 128 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	T	I	H	A	G	Y	V	T	G	L	V	G	P	D	G	A	G	K	T	T	L	M	R	M	L	A	G	L	L	K	P	D	S	G	S	A	T	V	I	G	F	D	P	I	K	N	D	G	A	L	H	A	V	L	G	Y	M	P	Q	K	F	G	L	Y	E	D	L	T	V	M	E	N	L	N	L	Y	A	D
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S								S	T	T	S	S															T	T											S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	R	S	V	T	G	E	A	R	K	Q	T	F	A	R	L	L	E	F	T	S	L	G	P	F	T	G	R	L	A	G	K	L	S	G	G	M	K	Q	K	L	G	L	A	C	T	L	V	G	E	P	K	V	L	L	L	D	E	P	G	.	V	G	V	D	P	I	S	R	R	E	L	W	Q	M	V	H	E	L	A
Query Conservation																																																														.
Alig confidence		.	.	.	.	.	.	.																	.	.																																				.
Template Conservation		.	.	.	.	.	.	.																	.	.
Template Sequence		.	.	.	.	.	.	.	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	.	.	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q
Template Known Secondary structure		.	.	.	.	.	.	.														T			.	.								S																T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																	.	.
Template SS confidence
									143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		186	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	G	M	L	I	L	W	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	N	I	V	Y	V	M	D	A
Template Known Secondary structure			S								T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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