Job Description P0A9U1 Confidence 97.32% Date Thu Jan 5 11:11:22 GMT 2012 Rank 153 Aligned Residues 119 % Identity 18% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	G	L	L	G	P	N	G	A	G	K	S	T	T	F	K	M	M	C	G	L	L	V	P	T	S	G	Q	A	L	V	L	G	M	D	L	K	E	S	S	G	K	A	R	Q	H	L	G	Y	M	A	Q	K	F	S	L	Y	G	N	L	T	V	E	Q	N	L	R	F	F	S	G	V	Y	G	L	R	G	R	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	P	A
Template Known Secondary structure									T	T	S	S															T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																																								.	.	.	140
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		Q	N	E	K	I	S	R	M	S	E	A	F	G	L	K	S	I	A	S	H	A	T	D	E	L	P	L	G	F	K	Q	R	L	A	L	A	C	S	L	M	H	E	P	D	I	L	F	L	D	E	P	T	.	S	G	V	D	P	L	T	R	R	E	F	W	L	H	I	N	S	M	V	E	K	G	V	T	V	M	V
Query Conservation																																																						.
Alig confidence																	.	.																																				.																		.
Template Conservation																	.	.																																																						.
Template Sequence		A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	.	.	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	.	L	G	P	D	E	V	L	L	V
Template Known Secondary structure														T			.	.						T	T																		T		S										S	S																.				S
Template Predicted Secondary structure																	.	.																																																						.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.
		516	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		218	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions