Job Description P0A9U1 Confidence 100.00% Date Thu Jan 5 11:11:22 GMT 2012 Rank 2 Aligned Residues 446 % Identity 24% Template c1yqtA_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor Resolution 1.90 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60									.	.	.	.		.	.	.	.	.	70	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.					.										.
Query SS confidence																																																						.	.	.	.	.	.	.	.					.										.
Query Sequence		N	G	L	E	K	R	F	P	G	M	D	K	P	A	V	A	P	L	D	C	T	I	H	A	G	Y	V	T	G	L	V	G	P	D	G	A	G	K	T	T	L	M	R	M	L	A	G	L	L	K	P	D	.	.	.	.	.	.	.	.	S	G	S	A	.	T	V	I	G	F	D	P	I	K	.	N	D	G	A	L
Query Conservation																																																						.	.	.	.	.	.	.	.					.										.
Alig confidence										.	.																																											.	.	.	.	.	.	.	.					.										.
Template Conservation										.	.
Template Sequence		E	D	C	V	H	R	Y	G	.	.	V	N	A	F	V	L	Y	R	L	P	V	V	K	E	G	X	V	V	G	I	V	G	P	N	G	T	G	K	S	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	G	D	N	D	S	W	D	G	V	I	R	A	F	R	G	N	E	L	Q	N	Y	F	E	K	L	K
Template Known Secondary structure									S	.	.	T	T												T	T	S								T	T	S	S										T	S	S				T	T	T	T			S								T	T	T	S	T
Template Predicted Secondary structure										.	.
Template SS confidence
		77	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	V	L	G	Y	M	P	Q	K	F	G	L	Y	E	D	L	T	V	M	E	N	L	N	L	Y	A	D	L	R	S	V	T	G	E	A	R	K	Q	T	F	A	R	L	L	E	F	T	S	L	G	P	F	T	G	R	L	A	G	K	L	S	G	G	M	K	Q	K	L	G	L	A	C	T	L	V	G	E	P	K
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		N	G	E	I	R	P	V	V	K	.	.	.	.	P	Q	Y	V	D	L	I	P	K	A	V	K	G	K	V	I	E	L	L	K	K	A	D	E	T	G	K	L	E	E	V	V	K	A	L	E	L	E	N	V	L	E	R	E	I	Q	H	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R	N	A	T
Template Known Secondary structure		T	T	S							.	.	.	.		S		G	G	G	S	G	G	G			S	B										S	S	S									T	T		T	T	T	T	T	S	B	G	G	G																	S			S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		V	L	L	L	D	E	P	G	V	G	V	D	P	I	S	R	R	E	L	W	Q	M	V	H	E	L	A	G	E	G	M	L	I	L	W	S	T	S	Y	L	D	E	A	E	Q	.	C	R	D	V	L	L	M	N	E	G	E	L	L	Y	Q	G	E	P	K	A	L	T	Q	T	M	A	G	R	S	F	L	M	T	S
Query Conservation																																															.
Alig confidence																																															.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	N	A	A	R	A	I	R	R	L	S	E	E	G	K	S	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	I	I	H	V	V	Y	G	E	P	G	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	T	T	T	T																			T	T								S										S									T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	E	G	N	R	K	L	L	Q	R	A	L	K	L	P	Q	V	S	D	G	M	I	Q	G	K	S	V	R	L	I	L	K	K	E	A	T	P	D	D	I	R	H	A	D	G	M	P	E	I	N	I	N	E	T	T	P	R	F	E	D	A	F	I	D	L	L	G	G	A	G	T	S	E	S	P	L	G	A	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	S	Q	P	K	G	T	R	N	G	I	N	E	F	L	R	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	K	F	T	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T			T	T	T	T				S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																														292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	T	V	E	G	T	P	G	E	T	V	I	E	A	K	E	L	T	K	K	F	G	D	F	A	A	T	D	H	V	N	F	A	V	K	R	G	E	I	F	G	L	L	G	P	N	G	A	G	K	S	T	T	F	K	M	M	C	G	L	L	V	P	T	S	G	Q	A	L	V	L	G	M	D	L	K	E	S	S
Query Conservation
Alig confidence																												.																																															.	.	.	.	.	.	.
Template Conservation																												.																																															.	.	.	.	.	.	.
Template Sequence		T	G	E	R	V	E	I	E	R	E	T	L	V	T	Y	P	R	L	V	K	D	Y	G	S	F	R	.	L	E	V	E	P	G	E	I	K	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	X	L	A	G	V	E	E	P	T	E	G	K	I	E	W	D	L	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	G	G	G	S	S																T	T			.										T	T									T	T	S	S										T	S	S			S	B								.	.	.	.	.	.	.
Template Predicted Secondary structure																												.																																															.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	R	Q	H	L	G	Y	M	A	Q	K	F	S	L	Y	G	N	L	T	V	E	Q	N	L	R	F	F	S	G	V	Y	G	L	R	G	R	A	Q	N	E	K	I	S	R	M	S	E	A	F	G	L	K	S	I	A	S	H	A	T	D	E	L	P	L	G	F	K	Q	R	L	A	L	A	C	S	L	M	H
Query Conservation
Alig confidence		.	.	.	.	.																												.	.	.	.
Template Conservation		.	.	.	.	.																												.	.	.	.
Template Sequence		.	.	.	.	.	T	V	A	Y	K	P	Q	Y	I	K	A	D	Y	E	G	T	V	Y	E	L	L	S	K	I	D	A	S	.	.	.	.	K	L	N	S	N	F	Y	K	T	E	L	L	K	P	L	G	I	I	D	L	Y	D	R	E	V	N	E	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R
Template Known Secondary structure		.	.	.	.	.							S	S						S	S	B												.	.	.	.			T								T	T	T	T	T	T		G	G	G	T	T	S	B	G	G	G																T	S
Template Predicted Secondary structure		.	.	.	.	.																												.	.	.	.
Template SS confidence
							400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.					.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																																		.															.
Query SS confidence																																		.															.
Query Sequence		E	P	D	I	L	F	L	D	E	P	T	S	G	V	D	P	L	T	R	R	E	F	W	L	H	I	N	S	M	V	E	K	.	G	V	T	V	M	V	T	T	H	F	M	D	E	A	.	E	Y	C	D	R	I	G	L	V	Y	R	G	K	L	I	A	S	G
Query Conservation																																		.															.
Alig confidence																																		.															.										.
Template Conservation																																																											.
Template Sequence		D	A	D	I	Y	L	L	D	E	P	S	A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	X	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	X	I	D	Y	V	S	D	R	L	X	V	F	.	E	G	E	P	G	K	Y	G
Template Known Secondary structure				S							T	T	T	T																					T								S										S						.				T	T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.