Job Description P23917 Confidence 91.31% Date Thu Jan 5 11:40:37 GMT 2012 Rank 141 Aligned Residues 278 % Identity 18% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.																															.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	R	L	P	T	P	R	D	.	.	.	D	Y	R	Q	T	I	E	T	I	A	T	L	V	D
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		A	V	V	I	D	P	G	S	Y	T	T	N	I	G	Y	S	G	S	D	F	P	Q	S	I	L	P	S	V	Y	G	K	Y	T	A	D	E	G	N	K	K	I	F	S	E	Q	S	I	G	I	P	R	K	D	Y	E	L	K	P	I	I	E	N	G	L	V	I	D	W	D	T	A	Q	E	Q	W	Q	W	A	L	Q
Template Known Secondary structure									S	S							T	T		S	S		S					S						S	S		S	S							T	T	G	G	G	S			T	T						S			T	T			S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		M	A	E	Q	A	T	G	Q	R	G	T	V	G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N	A	N	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	.	V	R	L	A	N	D	A	N	C	L	A	V	S	E	A	V	D	G	A	A	A	G	A	Q	T	V	F	A
Query Conservation																																																					.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																										.													.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Sequence		N	E	L	Y	L	N	S	N	S	G	I	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	.	.	.	.	.	.	.	A	A	G	R	P	N	C	L	V
Template Known Secondary structure			T	S			S			T	T						.	.	.	.	.	.	.	.	.	.	.				T	T															T	T	S			S														.	.	.	.	.	.	.			T		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110												.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P	W	M	D	E	D	E	L	R	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	P	C	Y	C	G	K	Q	G	C	I	E	T	F	I	S	G	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	I	G	H	D	T	C	S	V	S	P	I	V	D	G	M	T	L	S	K	S	T	R	R	N	F	I	A	G	K	F	I	N	H	L	I	K	K	A	L	E	P	K	E	I	I	P	L	F	A	I	K	Q	R	K	P	E	F	I	K	K	T	F	D	Y	E	V	D	K	S	L	Y	D	Y	A	N	N	R	G
Template Known Secondary structure						S	S									T	T				G	G	G					S		S												T	T	T	S					S	T	T					S	S	S							S	S														T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.													.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	A	M	D	Y	R	R	L	S	G	H	A	L	K	G	S	E	I	I	R	L	V	E	E	.	.	.	.	.	.	.	.	.	.	.	.	S	D	P	V	A	E	L	A	L	R	R	Y	E	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	Q	E	C	K	E	T	L	C	H	I	C	P	T	K	T	L	E	E	T	K	T	E	L	S	S	T	A	K	R	S	I	E	S	P	W	N	E	E	I	V	F	D	N	E	T	R	Y	G	F	A	E	E	L	F	L	P	K	E	D	D	I	P	A	N	W	P	R	S	N	S	G	V	V	K	T	W	R	N
Template Known Secondary structure										T					S	S												T									S	S	S																T	T	T	S			T	T	T	S		T	T	S				S	S							S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
																	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.								.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	S	L	A	H	V	V	N	I	L	D	P	D	V	.	.	.	.	.	.	.	I	V	L	G	G	G	M	S	N	V	D	R	L	Y	Q	T	V	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K	H	G	D	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.																											.	.
Template Conservation																																																																		.	.
Template Sequence		D	Y	V	P	L	K	R	T	K	N	N	E	L	I	G	L	A	D	L	V	Y	S	S	I	M	S	S	D	V	D	L	R	A	T	L	A	H	N	V	V	L	T	G	G	T	S	S	I	P	G	L	S	D	R	L	M	T	E	L	N	K	I	L	P	.	.	S	L	K	F	R	I	L	T	T	G	H	T	I	E
Template Known Secondary structure																											T	S		T	T	T						T	T					S	G	G	G	G	S	T	T													S	T	.	.	T	S								S		G	G	G
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.			.	.	.	.	.	.	.	.	390	.	.	.	.	.
					290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	G	V	R	G	A	A	W	L	W
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		R	Q	Y	Q	S	W	L	G	G	S	I	L	T
Template Known Secondary structure		G	G	S
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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